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Issue getting IDBac to run in R #162

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powerhelix opened this issue May 28, 2024 · 1 comment
Open

Issue getting IDBac to run in R #162

powerhelix opened this issue May 28, 2024 · 1 comment

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@powerhelix
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Hello,
I've got an issue getting IDBac to run in R. I'm using R 4.4.0 right now. I've successfully installed IDBac -- no errors came up during the installation process. Running it gives the following error.

IDBacApp::run_app()
Loading required package: shiny

Listening on http://127.0.0.1:7762
Given path to msconvert didn't work, trying to auto-find in Programs
Warning: Error in : error in evaluating the argument 'pool' in selecting a method for function 'poolCheckout':
72:
71: stop
70: stopWithCondition
69: reactiveStop
68: fun_
67: dotloop
66: req
65:
49: pool
47: observe
46:
3: runApp
2: print.shiny.appobj
1:

Everything from "Warning: Error..." repeats 3 times. The IDBac GUI pops up briefly, but crashes within a couple seconds. R continues to treat the code as running. Has anyone else experienced a problem like this? I have MSconvert installed on my computer via Proteowizard 3.0.23129, so I'm not sure what else it could be.

Cheers,
Eric

@chasemc
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chasemc commented Jun 14, 2024

Support is pretty low for the code base since there's work going on to make an online version.
The last of the code was written when R was at v3.6 so it's unlikely to work with v4.4 (also Shiny and other packages have had breaking changes since.)

However, the Electron app (https://github.com/chasemc/IDBacApp/releases/download/1.1.10/IDBac.Setup.1.1.10.exe) should still work as it bundles R and all the dependencies

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