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Edit distance in SAM header #31

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ropolomx opened this issue Feb 19, 2017 · 0 comments
Open

Edit distance in SAM header #31

ropolomx opened this issue Feb 19, 2017 · 0 comments

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@ropolomx
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ropolomx commented Feb 19, 2017

I was hoping to get some clarification on the reporting of the edit distance of SNAP alignments. I am looking at one of the files that ends in *NT.snap.matched.fl.Primates.annotated. In the SAM header in the field next to RG:Z:FASTQ, is that the edit distance? I see values such as 00 and 09. In other words, if I cut the lines of the annotated SAM file and choose field # 14, is that the edit distance? Thank you.

@ropolomx ropolomx changed the title Edit distance on SAM header Edit distance in SAM header Feb 19, 2017
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