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<div class="breadcrumb"><a href="/">Home</a> › COMBINE 2011</div> <h1 class="title">COMBINE 2011</h1>
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<div style="float: right"><img src="/system/files/hits_trimmed.jpg" File:hits_trimmed.jpg/></div> <p><i>Dates</i>: <i><b>September 3–7, 2011</b></i><br /> <i>Location</i>: <i><b>Heidelberg, Germany</b></i><br /> <i>Hosted by: <a rel="nofollow" class="external text" href="http://www.h-its.org/english/index.php">Heidelberg Institute for Theoretical Studies (HITS)</a></i> </p><p>The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats in systems biology and related fields. </p><p>In 2010, the systems biology standards community inaugurated a new, broader series of meetings to replace, among other events, individual SBML, SBGN, and BioPAX meetings. The new meetings, named COMBINE (Computational Modeling in Biology Network) and HARMONY (Hackathon on Resources for Modeling in Biology) are a recognition of the fact that there are multiple allied standardization efforts that should work more closely together to ensure smooth interoperability. </p><p>The <a class="freelinking external" href="http://sbml.org/Events/Forums/COMBINE_2010">first annual COMBINE meeting</a> took place in Edinburgh from Oct 6th to 9th, 2010. The second COMBINE meeting took place on September 3–7, 2011, in Heidelberg, immediately following the 12th International Conference on Systems Biology (<a class="freelinking external" href="http://www.icsb-2011.net/">ICSB2011</a>). </p> <table class="borderless-table" align="center" style="margin: 1.5em auto 1em auto"> <tr> <td valign="top" width="110px" align="center"> <img src="/system/files/icon-people-50x45_0.gif" file:icon-people-50x45.gif/><br /><a class="freelinking external" href="http://old_co.mbine.org/events/COMBINE_2011/attendees "> List of attendees</a> </td> <td valign="top" width="110px" align="center"> <img src="/system/files/icon-posters-38x45_1.gif" file:icon-posters-38x45.gif/><br /><a rel="nofollow" class="external text" href="http://old_co.mbine.org/events/COMBINE_2011/posters">Poster List</a> </td> <td valign="top" width="110px" align="center"> <img src="/system/files/book_v2_0.png" file:book_v2.png/><br /> <a rel="nofollow" class="external text" href="http://precedings.nature.com/collections/combine-2011">Nature Precedings<br />COMBINE 2011 collection</a> </td> <td valign="top" width="110px" align="center"> <img src="/system/files/icon-broadcast-49x45_0.gif" file:icon-broadcast-49x45.gif/><br /><a rel="nofollow" class="external text" href="http://old_co.mbine.org/events/COMBINE_2011/evo">EVO Feed</a> </td> <td valign="top" width="110px" align="center"> <img src="/system/files/Travel.gif" file:travel.gif/><br /><a rel="nofollow" class="external text" href="http://old_co.mbine.org/events/COMBINE_2011/Travel_Information">Travel Information</a> </td> <td valign="top" width="110px" align="center"> <img src="/system/files/icon-camera-50x45_1.gif" file:icon-camera-50x45.gif/><br /> <a rel="nofollow" class="external text" href="http://www.smugmug.com/gallery/18940287_4Ns4vH">Photos</a> </td> <td valign="top" width="110px" align="center"> <img src="/system/files/icon-thumbs-up-down-70x45.gif" file:icon-thumbs-up-down-70x45.gif/><br /> <a class="freelinking external" href="http://old_co.mbine.org/events/COMBINE_2011/exit-survey "> Exit Survey</a> </td></tr></table> <h2><span class="mw-headline" id="Live_Stream:_http:.2F.2Fstudio.villa-bosch.de.2Fdeutsch.2Fsites.2Flive.asp">Live Stream: <a rel="nofollow" class="external free" href="http://studio.villa-bosch.de/deutsch/sites/live.asp">http://studio.villa-bosch.de/deutsch/sites/live.asp</a></span></h2> <p><b>(only works with Internet Explorer Version 5.5 and higher)</b> </p> <h2><span class="mw-headline" id="Agenda">Agenda</span></h2> <p>COMBINE is a workshop-style event with oral presentation, posters and breakout sessions. The five meeting days included talks about the <a href="/standards" class="freelinking">COMBINE standards and associated or related standardization efforts</a>, as well as presentations of tools using these standards. Oral presentations were selected from the submitted abstracts. In addition to oral presentations, poster sessions allowed people to inform each other about their software and other projects in a setting that allowed interaction and in-depth discussion. </p> <h3><span class="mw-headline" id="Session_schedule">Session schedule</span></h3> <p>COMBINE 2011 was organized into sessions, largely built based on the attendees' suggestions. Those sessions were grouped according to overall themes as summarized in the table below. </p><p>The <b><a href="/events/COMBINE_2011/Agenda" class="freelinking"> detailed agenda</a></b> is on a separate page. </p> <table border="0" align="center" width="95%" style="border: 1px solid #ccc"> <tr> <th width="150px" style="background-color: #ccc; border-bottom: 1px solid #bbb"> Sat 3 </th> <th width="150px" style="background-color: #ccc; border-bottom: 1px solid #bbb"> Sun 4 </th> <th width="150px" style="background-color: #ccc; border-bottom: 1px solid #bbb"> Mon 5 </th> <th width="150px" style="background-color: #ccc; border-bottom: 1px solid #bbb"> Tue 6 </th> <th width="150px" style="background-color: #ccc; border-bottom: 1px solid #bbb"> Wed 7 </th></tr> <tr> <td> <b>Simulation and analysis</b> </td> <td> <b>Open work session</b> </td> <td> <b>Mathematical model semantics</b> </td> <td> <b>Open work session</b> </td> <td> <b>Visual representation</b> </td></tr> <tr> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td></tr> <tr> <td> <b>Simulation and analysis</b> </td> <td> <b>Mathematical model semantics</b> </td> <td> <b>Mathematical model semantics</b> </td> <td> <b>Visual representation</b> </td> <td> <b>Applying Standards: Tools and Databases</b> </td></tr> <tr> <td style="background-color: #eee"> lunch </td> <td style="background-color: #eee"> lunch </td> <td style="background-color: #eee"> lunch </td> <td style="background-color: #eee"> lunch </td> <td style="background-color: #eee"> lunch </td></tr> <tr> <td> <b>Interoperability</b> </td> <td> <b>Mathematical model semantics</b> </td> <td> <b>Biological pathway semantics</b> </td> <td> <b>Visual representation</b> </td> <td> <b>Applying Standards: Tools and Databases</b> </td></tr> <tr> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td> <td style="background-color: #eee"> break </td></tr> <tr> <td> <b>Interoperability</b> </td> <td> <b>Mathematical model semantics</b> </td> <td> <b>Biological pathway semantics</b> </td> <td> <b>Visual representation</b> </td> <td> <b>Wrap-up</b> </td></tr> <tr> <td style="background-color: #eee"> </td> <td style="background-color: #eee"> <br /><u>17:00-18:30 Keynote:</u><br /><b> Michael White</b> </td> <td style="background-color: #eee"> <br /><u>17:00-18:30 Keynote:</u><br /><b> Peer Bork</b> </td> <td style="background-color: #eee"> </td> <td style="background-color: #eee"> </td></tr> <tr> <td> 19:00 - 22:30<br />Get-together </td> <td> </td> <td> 19:30 - 23:00<br />Conference dinner </td> <td> </td> <td> </td></tr></table> <p><span style="border-bottom: 1px dashed #000; padding: 0.25em">Example of COMBINE standards, associated efforts and related efforts discussed in different sessions:</span> </p> <table width="400px"> <tr> <th width="150px"> </th> <th width="5px"> </th> <th width="250px"> </th></tr> <tr> <td> <b>Simulation and analysis:</b> </td> <td> </td> <td> SED-ML; KiSAO; SBRML </td></tr> <tr> <td> <b>Interoperability:</b> </td> <td> </td> <td> MIRIAM URIs, SBO </td></tr> <tr> <td> <b>Mathematical model semantics:</b> </td> <td> </td> <td> SBML; NineML, CellML, FieldML </td></tr> <tr> <td> <b>Biological pathway semantics:</b> </td> <td> </td> <td> BioPAX </td></tr> <tr> <td> <b>Visual representation:</b> </td> <td> </td> <td> SBGN </td></tr> <tr> <td> <b>Applying Standards - Tools and Databases:</b> </td> <td> </td> <td> all </td></tr> </table> <h3><span class="mw-headline" id="Conference_dinner">Conference dinner</span></h3> <p>There was a conference dinner (sponsored by HITS) on Monday, September 5th at the restaurant <a class="freelinking external" href="http://www.restaurant-s-kastanie.de/">S'Kastanie</a>. </p> <h3><span class="mw-headline" id="Welcome_get-together">Welcome get-together</span></h3> <p>On Saturday September 3 we had a welcome get-together at 7:00 PM in the <a class="freelinking external" href="http://oreillys.nl/heidelberg/">O'Reilly's Irish Pub</a> (sponsored). There was fireworks in the old town and the <a class="freelinking external" href="http://www.heidelberg-marketing.de/content/culture__events/events/castle_illuminations/index_eng.html">castle will be illuminated</a> that night. This is one of the major events in Heidelberg each year and definitely a nice experience. </p> <h2><span class="mw-headline" id="More_on_presentations.2C_discussions_etc.">More on presentations, discussions etc.</span></h2> <p>Please send your presentations to Linda Taddeo, who will put them on the <a href="/events/COMBINE_2011/agenda" class="freelinking"> detailed agenda page</a>. </p><p>You have also the possibility to publish them in the <a rel="nofollow" class="external text" href="http://precedings.nature.com/collections/combine-2011">Nature Precedings COMBINE 2011 collection</a>. Please use the dedicated <a rel="nofollow" class="external text" href="http://precedings.nature.com/collections/combine-2011/documents/new">submission page</a>. </p><p>To organise or participate to a breakout discussion, we had a <a href="/https%3A/%252Fdocs.google.com/spreadsheet/ccc%3Fkey%3D0ApbKgxVhXxVydGJxazZjRTgxdnE4R0hULVlfajdHNVE%2526amp%3Bhl%3Den_US" class="freelinking"> Google spreadsheet</a>. </p> <h2><span class="mw-headline" id="Location">Location</span></h2> <p>COMBINE 2011 was held at the excellent conference facilities of <a class="freelinking external" href="http://www.studio.villa-bosch.de/indexenglish.asp">Studio Villa Bosch</a> in Heidelberg. The address is Schloss-Wolfsbrunnenweg 33, 69118 Heidelberg, Germany. </p><p>Visit the <a rel="nofollow" class="external text" href="http://www.h-its.org/english/directions.php">Studio Villa Bosch directions page</a> for detailed information about how to reach the venue. </p><p><html><iframe width="748" height="400" frameborder="0" scrolling="no" marginheight="0" marginwidth="0" src="<a rel="nofollow" class="external free" href="http://maps.google.de/maps/ms?hl=de&ie=UTF8&t=h&msa=0&msid=218170271103877868776.0004a3b47d58aae341644&ll=49.4098,8.705807&spn=0.022338,0.064201&z=14&output=embed">http://maps.google.de/maps/ms?hl=de&ie=UTF8&t=h&msa=0&msid=218170271103877868776.0004a3b47d58aae341644&ll=49.4098,8.705807&spn=0.022338,0.064201&z=14&output=embed</a>"></iframe><br /><small><a target="_blank" href="<a rel="nofollow" class="external free" href="http://maps.google.de/maps/ms?hl=de&ie=UTF8&t=h&msa=0&msid=218170271103877868776.0004a3b47d58aae341644&ll=49.4098,8.705807&spn=0.022338,0.064201&z=14&source=embed">http://maps.google.de/maps/ms?hl=de&ie=UTF8&t=h&msa=0&msid=218170271103877868776.0004a3b47d58aae341644&ll=49.4098,8.705807&spn=0.022338,0.064201&z=14&source=embed</a>" style="color:#0000FF;text-align:left">View a larger version of this COMBINE 2011 map</a></small></html> <br /><br /> </p><p><br /> </p> <h2><span class="mw-headline" id="Registration">Registration</span></h2> <p><span style="color: red; font-weight: bold; border: 1px solid red; padding: 0.25em">CLOSED (August 25, 2011)</span> </p><p><br /> Please note: Your registration only becomes valid after paying the conference fee. </p> <h3><span class="mw-headline" id="Registration_Fee">Registration Fee</span></h3> <p><b>Regular Registration (after July 15):</b> 90 €<br /> </p><p>Rest assured that you will get your money's worth out of the registration fee: </p> <ul><li> Five full hot lunches (Saturday to Wednesday)</li> <li> Welcome get-together (including food) on Saturday in the <a class="freelinking external" href="http://oreillys.nl/heidelberg/">O'Reilly's Irish Pub</a></li> <li> Conference dinner on Monday at the restaurant <a class="freelinking external" href="http://www.restaurant-s-kastanie.de/">S'Kastanie</a></li> <li> Coffee, refreshments and snacks during meeting hours, and coffee breaks all five days</li> <li> Transportation between Heidelberg city centre and the meeting venue (bus shuttle)</li></ul> <h3><span class="mw-headline" id="Payment">Payment</span></h3> <p>We can accept payment of the registration fee using the following alternative approaches: </p><p><b>1) Bank Transfer</b> </p><p>If you chose to pay via bank transfer, please transfer the registration fee to the following bank account:<br /> <u>Name:</u> HITS gGmbH<br /> <u>Bank:</u> Volksbank Kraichgau Wiesloch-Sinsheim eG<br /> <u>Bank code:</u> 672 922 00<br /> <u>Account number:</u> 27995241<br /> <u>IBAN:</u> DE32 6729 2200 0027 9952 41<br /> <u>Bank Identifier Code (BIC):</u> GENODE61WIE<br /> </p><p>In the transfer, please include the keyword "COMBINE 2011" plus your full name. </p><p><b>2) PayPal/Credit Card</b> </p><p>Alternatively, you can choose the appropiate registration fee here and transfer it using PayPal. </p><p><html> <form action="<a rel="nofollow" class="external free" href="https://www.paypal.com/cgi-bin/webscr">https://www.paypal.com/cgi-bin/webscr</a>" method="post" enctype="application/x-www-form-urlencoded"> </p> <p class="MsoNormal" style="vertical-align: top"> <SELECT NAME="amount"> <OPTION VALUE="90.00">Regular 90 Eur </SELECT> <span style="display:none;mso-hide:all"> <INPUT TYPE="hidden" NAME="return" VALUE="<a rel="nofollow" class="external free" href="http://old_co.mbine.org/events/COMBINE_2011">http://old_co.mbine.org/events/COMBINE_2011</a>"> <INPUT TYPE="hidden" NAME="cancel_return" VALUE="<a rel="nofollow" class="external free" href="http://old_co.mbine.org/events/COMBINE_2011">http://old_co.mbine.org/events/COMBINE_2011</a>"> <INPUT TYPE="hidden" NAME="bn" VALUE="PP-BuyNowBF"> <INPUT TYPE="hidden" NAME="cmd" VALUE="_xclick"> <INPUT TYPE="hidden" NAME="business" VALUE="[email protected]"> <INPUT TYPE="hidden" NAME="item_name" VALUE="COMBINE 2011 - Registration Fee"> <INPUT TYPE="hidden" NAME="currency_code" VALUE="EUR"> <INPUT TYPE="hidden" NAME="lc" VALUE="US"></span>      <INPUT TYPE="image" SRC="<a rel="nofollow" class="external free" href="https://www.paypal.com/en_US/i/btn/btn_paynowCC_LG.gif">https://www.paypal.com/en_US/i/btn/btn_paynowCC_LG.gif</a>" METHOD="post" NAME="submit" ACTION="<a rel="nofollow" class="external free" href="https://www.paypal.com/cgi-bin/webscr">https://www.paypal.com/cgi-bin/webscr</a>" alt="Make payment using PayPal" border="0"></p> <p></form> </html> </p><p><br /> </p> <h2><span class="mw-headline" id="Additional_notes">Additional notes</span></h2> <h3><span class="mw-headline" id="Poster_dimensions">Poster dimensions</span></h3> <p>The maximum poster size is <a class="freelinking external" href="http://en.wikipedia.org/wiki/Paper_size "> A0</a>, which is 841mm (width) x 1189mm (height), or approximately 33 1/8 x 46 1/4 inches, in a portrait orientation. </p> <h3><span class="mw-headline" id="Electrical_supply">Electrical supply</span></h3> <div style="float: right; margin-left: 1em"><img src="/system/files/220px-Schuko_plug_and_socket.png" File:220px-Schuko_plug_and_socket.png/></div> <p>If you are traveling from abroad, be sure to bring an appropriate power plug converter for your laptop and all other electrical devices you're bringing. The domestic electric system in Germany uses 230 V at 50 Hz. The plug type (<a class="freelinking external" href="http://en.wikipedia.org/wiki/Electrical_plug#Type_F">Type F</a>) is depicted here. </p><p>It might be hard to find an appropriate converter in Heidelberg, so you better bring your own from your home country. </p> <h3><span class="mw-headline" id="Internet_access">Internet access</span></h3> <p>The meeting room will have wireless internet access. We will provide the necessary access information on-site. </p> <h3><span class="mw-headline" id="About_Heidelberg">About Heidelberg</span></h3> <p><i><b>Public Transport</b></i> </p><p><a class="freelinking external" href="http://www.vrn.de/mam/vrn/einfach-ankommen/dokumente/stadtlinienplaene/heidelberg_schematisch.pdf">Schematic map of the public transport system within the city of Heidelberg</a> </p><p><a class="freelinking external" href="http://www.vrn.de/mam/vrn/einfach-ankommen/dokumente/stadtlinienplaene/heidelberg.pdf">Detailed map of the public transport system</a><br /><br /> <a class="freelinking external" href="http://fahrplanauskunft.vrn.de/vrn/XSLT_TRIP_REQUEST2?language=de">Interactive time table information</a> </p><p><i><b>Taxi</b></i> </p><p><a class="freelinking external" href="http://www.taxizentrale-heidelberg.de">Taxi Zentrale</a>: Phone + 49 (0) 6221 - 302030<br /> <a class="freelinking external" href="http://www.taxihdirekt.de">Taxi HDirekt</a>: Phone + 49 (0) 6221 - 739090 </p><p><i><b>Sightseeing</b></i> </p><p>Heidelberg's most interesting sights (and there are many!) include the Old Town (<a class="freelinking external" href="http://ww2.heidelberg.de/Altstadt-Information/english/index.htm">Interactive map of the old town of Heidelberg</a>) with the world-famous <a class="freelinking external" href="http://www.heidelberg-marketing.de/content/tourism/sights/heidelberg_castle_castle_gardens/index_eng.html">castle</a>, Germany’s oldest <a class="freelinking external" href="http://www.uni-heidelberg.de/index_e.html">university</a> (celebrating its <a class="freelinking external" href="http://625.uni-heidelberg.de/index_en.html">625 year anniversary</a> this year).<br /><br /> Please visit the official <a class="freelinking external" href="http://www.heidelberg-marketing.de/content/tourism/sights/index_eng.html">Heidelberg Tourism page</a> for more information.<br /> Information in German could also be found at <a class="freelinking external" href="http://www.heidelberg-mobil.de/">Heidelberg mobil</a>. </p><p><br /> </p> <h2><span class="mw-headline" id="Funding_acknowledgments">Funding acknowledgments</span></h2> <p>Support for COMBINE 2011 is being provided by the following organizations: </p> <table border="0" align="center"> <tr> <td align="center"> <img src="/system/files/icon-hits-30x30.jpg" File:icon-hits-30x30.jpg/><br /> <p><a rel="nofollow" class="external text" href="http://www.h-its.org/english/index.php/">HITS</a> </p> </td> <td align="center"> <img src="/system/files/VLN-30x30_0.jpg" File:VLN-30x30.jpg/><br /> <p><a rel="nofollow" class="external text" href="http://www.virtual-liver.de/">Virtual Liver</a> </p> </td> <td align="center"> <img src="/system/files/Icon-nigms-logo-30x30.jpg" File:Icon-nigms-logo-30x30.jpg/><br /> <p><a rel="nofollow" class="external text" href="http://www.nigms.nih.gov/">NIH/NIGMS</a> </p> </td> <td align="center"> <img src="/system/files/dfg_logo_1.gif" File:dfg_logo.gif/><br /> <p><a rel="nofollow" class="external text" href="http://www.dfg.de/en/index.jsp">DFG</a> </p> </td></tr></table> <p><br /> </p> <h2><span class="mw-headline" id="Organization">Organization</span></h2> <p>COMBINE 2011 is being organized by: </p> <ul><li> <a class="freelinking external" href="mailto:[email protected]">Martin Golebiewski</a>, Heidelberg Institute for Theoretical Studies (HITS), Germany</li> <li> <a class="freelinking external" href="mailto:[email protected]">Michael Hucka</a>, California Institute of Technology (Caltech), USA</li> <li> <a class="freelinking external" href="mailto:[email protected]">Nicolas Le Novère</a>, European Bioinformatics Institute (EMBL-EBI), UK</li> <li> <a class="freelinking external" href="mailto:[email protected]">Sven Sahle</a>, BioQuant at the University of Heidelberg, Germany</li></ul> <p>For local organisational issues and detailed inquiries please contact: </p><p><a class="freelinking external" href="mailto:[email protected]">Martin Golebiewski</a><br /> HITS gGmbH<br /> Schloss-Wolfsbrunnenweg 35<br /> 69118 Heidelberg<br /> Germany<br /> Phone: +49 (0)6221 - 533 - 281<br /> Fax: +49 (0)6221 - 533 - 298 <br /><br /> For practical information on the setting and organisation please contact: </p><p><a class="freelinking external" href="mailto:[email protected]">Kornelia Gorisch</a><br /> HITS gGmbH<br /> Schloss-Wolfsbrunnenweg 35<br /> 69118 Heidelberg<br /> Germany<br /> Phone: +49 (0)6221 - 533 - 246<br /> Fax: +49 (0)6221 - 533 - 298 </p><p><a class="freelinking external" href="mailto:[email protected]">Linda Taddeo</a><br /> Caltech<br /> 1200 E California Blvd.<br /> MC 139-74<br /> Pasadena, CA 91125<br /> USA<br /> Phone: +01-626-395-3375<br /> Fax: +01-626-395-3336 </p> <!-- NewPP limit report Cached time: 20220802131840 Cache expiry: 86400 Dynamic content: false CPU time usage: 0.075 seconds Real time usage: 0.080 seconds Preprocessor visited node count: 456/1000000 Preprocessor generated node count: 1030/1000000 Post‐expand include size: 0/2097152 bytes Template argument size: 0/2097152 bytes Highest expansion depth: 2/40 Expensive parser function count: 0/100 --> <!-- Transclusion expansion time report (%,ms,calls,template) 100.00% 0.000 1 - 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