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side_view_morphology_analysis.txt
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{"metadata": {}, "observations": {"default": {"branch_pts": {"trait": "list of branch-point coordinates identified from a skeleton", "method": "plantcv.plantcv.morphology.find_branch_pts", "scale": "pixels", "datatype": "<class 'list'>", "value": [[525, 557], [528, 549], [522, 549], [524, 540], [532, 502], [525, 475], [539, 419], [530, 358], [551, 294]], "label": [0, 1, 2, 3, 4, 5, 6, 7, 8]}, "tips": {"trait": "list of tip coordinates identified from a skeleton", "method": "plantcv.plantcv.morphology.find_tips", "scale": "pixels", "datatype": "<class 'list'>", "value": [[563, 276], [758, 206]], "label": [0, 1]}, "segment_area": {"trait": "segment area", "method": "plantcv.plantcv.morphology.fill_segments", "scale": "pixels", "datatype": "<class 'list'>", "value": [1934, 5822, 3696, 897, 11201, 4082], "label": [0, 1, 2, 3, 4, 5]}, "segment_path_length": {"trait": "segment path length", "method": "plantcv.plantcv.morphology.segment_path_length", "scale": "pixels", "datatype": "<class 'list'>", "value": [68.8614347577095, 306.43964272737503, 186.6518018245697, 46.64213538169861, 450.1589421033859, 343.70309841632843], "label": [0, 1, 2, 3, 4, 5]}, "segment_eu_length": {"trait": "segment euclidean length", "method": "plantcv.plantcv.morphology.segment_euclidean_length", "scale": "pixels", "datatype": "<class 'list'>", "value": [65.79513659838392, 230.2628932329306, 171.73526137634053, 43.73785545725808, 335.01343256651666, 225.49722836434154], "label": [0, 1, 2, 3, 4, 5]}, "segment_curvature": {"trait": "segment curvature", "method": "plantcv.plantcv.morphology.segment_curvature", "scale": "none", "datatype": "<class 'list'>", "value": [1.0466037205461307, 1.330825120908149, 1.0868577619335908, 1.0664019736239396, 1.343704157337056, 1.5242009886746755], "label": [0, 1, 2, 3, 4, 5]}, "segment_angle": {"trait": "segment angle", "method": "plantcv.plantcv.morphology.segment_angle", "scale": "degrees", "datatype": "<class 'list'>", "value": [49.249563953808014, 3.5748676507317834, -63.252373827872105, -85.32327635712205, -32.37931089257834, 25.969849422607325], "label": [0, 1, 2, 3, 4, 5]}, "segment_tangent_angle": {"trait": "segment tangent angle", "method": "plantcv.plantcv.morphology.segment_tangent_angle", "scale": "degrees", "datatype": "<class 'list'>", "value": [168.09318393691606, 102.13489406556, 179.20393120695127, 151.50468300913857, 97.7806689602444, 56.683202158224226], "label": [0, 1, 2, 3, 4, 5]}, "segment_insertion_angle": {"trait": "segment insertion angle", "method": "plantcv.plantcv.morphology.segment_insertion_angle", "scale": "degrees", "datatype": "<class 'list'>", "value": [33.33208471575469, 43.9992692558055, 28.12874938952884, 27.50802179775808, 29.529033792029832, 19.734247002864407], "label": [0, 1, 2, 3, 4, 5]}}, "backend": {"segment_eu_length": {"trait": "segment euclidean length", "method": "plantcv.plantcv.morphology.segment_euclidean_length", "scale": "pixels", "datatype": "<class 'list'>", "value": [65.79513659838392, 230.2628932329306, 171.73526137634053, 43.73785545725808, 335.01343256651666, 225.49722836434154], "label": [0, 1, 2, 3, 4, 5]}, "segment_path_length": {"trait": "segment path length", "method": "plantcv.plantcv.morphology.segment_path_length", "scale": "pixels", "datatype": "<class 'list'>", "value": [68.8614347577095, 306.43964272737503, 186.6518018245697, 46.64213538169861, 450.1589421033859, 343.70309841632843], "label": [0, 1, 2, 3, 4, 5]}}, "default1": {"in_bounds": {"trait": "whether the plant goes out of bounds ", "method": "plantcv.plantcv.within_frame", "scale": "none", "datatype": "<class 'bool'>", "value": true, "label": "none"}, "area": {"trait": "area", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 27632.0, "label": "pixels"}, "convex_hull_area": {"trait": "convex hull area", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 152943.0, "label": "pixels"}, "solidity": {"trait": "solidity", "method": "plantcv.plantcv.analyze.size", "scale": "none", "datatype": "<class 'float'>", "value": 0.18066861510497376, "label": "none"}, "perimeter": {"trait": "perimeter", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 3648.365778207779, "label": "pixels"}, "width": {"trait": "width", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 549, "label": "pixels"}, "height": {"trait": "height", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 424, "label": "pixels"}, "longest_path": {"trait": "longest path", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 4041, "label": "pixels"}, "center_of_mass": {"trait": "center of mass", "method": "plantcv.plantcv.analyze.size", "scale": "none", "datatype": "<class 'tuple'>", "value": [520.783149971048, 312.27558627678053], "label": ["x", "y"]}, "convex_hull_vertices": {"trait": "convex hull vertices", "method": "plantcv.plantcv.analyze.size", "scale": "none", "datatype": "<class 'int'>", "value": 23, "label": "none"}, "object_in_frame": {"trait": "object in frame", "method": "plantcv.plantcv.analyze.size", "scale": "none", "datatype": "<class 'bool'>", "value": true, "label": "none"}, "ellipse_center": {"trait": "ellipse center", "method": "plantcv.plantcv.analyze.size", "scale": "none", "datatype": "<class 'tuple'>", "value": [503.5750732421875, 301.2665710449219], "label": ["x", "y"]}, "ellipse_major_axis": {"trait": "ellipse major axis length", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 527.0394287109375, "label": "pixels"}, "ellipse_minor_axis": {"trait": "ellipse minor axis length", "method": "plantcv.plantcv.analyze.size", "scale": "pixels", "datatype": "<class 'int'>", "value": 367.37481689453125, "label": "pixels"}, "ellipse_angle": {"trait": "ellipse major axis angle", "method": "plantcv.plantcv.analyze.size", "scale": "degrees", "datatype": "<class 'float'>", "value": 87.4616470336914, "label": "degrees"}, "ellipse_eccentricity": {"trait": "ellipse eccentricity", "method": "plantcv.plantcv.analyze.size", "scale": "none", "datatype": "<class 'float'>", "value": 0.7170188643627435, "label": "none"}}}}