Author: David Piñeyro
Date: 2020-11-05
Version: 0.0.1
License: GPL-3
This package is a collection of variables, classes and functions meant to process genomic data.
As now, it contains three handy classes:
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GeneAnnotated: this class is meant to represent a gene, generating an object with all the infromation as well as relevant sequences that can be obtained from a given annotation (GTF format). It also have some relevant functionality.
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FragmentedSeq: a class to represent fragmented sequences belonging to the same unit. To be more specific, it's meant to represent exons and introns from a given gene.
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CodonCounter: making use of a GeneAnnotated object, this class is meant to produce codon usage counting and some other codon related functionalities.
Contact: [email protected]