pipeline_interface_new.yaml

pipeline_name: BEDSTAT
pipeline_type: sample
path: pipeline/bedstat.py
input_schema: http://schema.databio.org/pipelines/bedstat.yaml
command_template: >
  {pipeline.path}
  --bedfile {sample.output_file_path}
  --genome {sample.genome}
  --sample-yaml {sample.yaml_file}
  {% if sample.bedbase_config is defined %} --bedbase-config {sample.bedbase_config} {% endif %}
  {% if sample.open_signal_matrix is defined %} --open-signal-matrix {sample.open_signal_matrix} {% endif %}