error in building model for likelihood (LH)

[LimKaiShi]

Hi encountered this error while building the model for LH, and when I try to use the output model for creating the universe it failed as well

the code I am running:

%%bash

# Extract unique categories from the metadata file
categories=($(awk -F"\t" '$6 != "disease_adult" && $6 != "tumor" && FNR > 1 {print $6}' "$HOME/scratch/retina_files/master_metadata.txt" | sort | uniq))

for categ in "${categories[@]}"; do
    echo "Processing category: $categ"

    file_no=$(wc -l < "$HOME/scratch/retina_files/analysis/universe/file_list_${categ}.txt")

    geniml lh build_model \
        --model-file "$HOME/scratch/retina_files/analysis/universe/coverage_${categ}/model.tar" \
        --coverage-folder "$HOME/scratch/retina_files/analysis/universe/coverage_${categ}/" \
        --file-no $file_no &
        
done
wait

The output:

Command: lh
/home/users/astar/gis/stukaishi/miniforge3/lib/python3.12/site-packages/geniml/likelihood/build_model.py:27: RuntimeWarning: invalid value encountered in log10
  np.log10((file_no - i) / (no_possible - no_cov) + 1e-10),
Function 'main' executed in 6.2146min
Processing category: healthy_fetus
Command: lh
/home/users/astar/gis/stukaishi/miniforge3/lib/python3.12/site-packages/geniml/likelihood/build_model.py:27: RuntimeWarning: invalid value encountered in log10
  np.log10((file_no - i) / (no_possible - no_cov) + 1e-10),
Function 'main' executed in 6.0920min

I have checked the file_no there is no problem and the coverage folder also works well with the other type of universe
Hope you can check it out, thanks for creating this amazing tools!