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Install.md: Additional graphviz installation steps for dj.Diagram() #50

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CBroz1 opened this issue Oct 26, 2021 · 2 comments
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Install.md: Additional graphviz installation steps for dj.Diagram() #50

CBroz1 opened this issue Oct 26, 2021 · 2 comments
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documentation Improvements or additions to documentation
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@CBroz1
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CBroz1 commented Oct 26, 2021

Following the notebooks, I encountered errors when generating diagrams. Specifically, I saw the following:

FileNotFoundError: [Errno 2] "dot" not found in path.

Comments elsewhere indicate that graphviz needs to be installed system-wide (e.g., brew install graphviz) rather than installed via pip. Installing with brew fixed the issue in my case.

Should this be noted in documentation? Should dependency lists be refined elsewhere?

@sidml
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sidml commented May 2, 2022

This fixes the issue
sudo apt install python-pydot python-pydot-ng graphviz
ref

@CBroz1 CBroz1 self-assigned this May 4, 2022
@CBroz1 CBroz1 transferred this issue from datajoint/workflow-array-ephys May 5, 2022
@CBroz1 CBroz1 changed the title Additional graphviz installation steps for dj.Diagram() Install.md: Additional graphviz installation steps for dj.Diagram() May 5, 2022
@CBroz1 CBroz1 added the documentation Improvements or additions to documentation label May 6, 2022
@kabilar kabilar added this to the 2023Q2+ milestone May 9, 2022
@kabilar kabilar transferred this issue from datajoint/datajoint-elements Oct 9, 2022
@CBroz1
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CBroz1 commented Dec 28, 2022

Documentation on this topic will either be covered by the datajoint python documentation

@CBroz1 CBroz1 closed this as completed Dec 28, 2022
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