From 9bfafc68121b78ef7a8c8c70118d628bdda761f0 Mon Sep 17 00:00:00 2001 From: Gabriele Penazzi Date: Wed, 28 Jan 2015 14:01:06 +0100 Subject: [PATCH] Fixed doxygen makefile and settings --- doc/.gitignore | 2 + doc/Doxyfile | 3 +- doc/Makefile | 3 +- tests/f90intApi/.gitignore | 3 - tests/f90intApi/GNUmakefile | 21 --- tests/f90intApi/GS/negf.in | 0 tests/f90intApi/H_imm.dat | 303 ------------------------------------ tests/f90intApi/H_real.dat | 303 ------------------------------------ tests/f90intApi/README | 2 - tests/f90intApi/hello.F90 | 67 -------- tests/f90intApi/negf.in | 24 --- 11 files changed, 6 insertions(+), 725 deletions(-) create mode 100644 doc/.gitignore delete mode 100644 tests/f90intApi/.gitignore delete mode 100644 tests/f90intApi/GNUmakefile delete mode 100644 tests/f90intApi/GS/negf.in delete mode 100644 tests/f90intApi/H_imm.dat delete mode 100644 tests/f90intApi/H_real.dat delete mode 100644 tests/f90intApi/README delete mode 100644 tests/f90intApi/hello.F90 delete mode 100644 tests/f90intApi/negf.in diff --git a/doc/.gitignore b/doc/.gitignore new file mode 100644 index 0000000..fbbb5dd --- /dev/null +++ b/doc/.gitignore @@ -0,0 +1,2 @@ +*.tmp +html diff --git a/doc/Doxyfile b/doc/Doxyfile index b0d8988..7b75830 100644 --- a/doc/Doxyfile +++ b/doc/Doxyfile @@ -83,13 +83,14 @@ WARN_LOGFILE = #--------------------------------------------------------------------------- # configuration options related to the input files #--------------------------------------------------------------------------- -INPUT = ../src ../include ../ext_sparskit +INPUT = ../src FILE_PATTERNS = *.c \ *.cpp \ *.h \ *.C \ *.H \ *.F90 \ + *.f90 \ *.f RECURSIVE = YES EXCLUDE = diff --git a/doc/Makefile b/doc/Makefile index 5c86bd3..aa0084f 100644 --- a/doc/Makefile +++ b/doc/Makefile @@ -11,7 +11,8 @@ doc: .PHONY: clean clean: - @rm -rf html + rm -f *.tmp + rm -rf html .PHONY: distclean distclean: clean diff --git a/tests/f90intApi/.gitignore b/tests/f90intApi/.gitignore deleted file mode 100644 index 64a62f9..0000000 --- a/tests/f90intApi/.gitignore +++ /dev/null @@ -1,3 +0,0 @@ -blocks.dat -hello -libnegf.h diff --git a/tests/f90intApi/GNUmakefile b/tests/f90intApi/GNUmakefile deleted file mode 100644 index 7241e30..0000000 --- a/tests/f90intApi/GNUmakefile +++ /dev/null @@ -1,21 +0,0 @@ -ROOT = ../../ -include ../../Makefile.user - -SOURCES := hello.F90 -LIBNEGF = $(ROOT)/src/api/libnegf_$(ARCH1).a -INCLUDES += -I$(ROOT)/src/api - -all: hello - -hello: $(LIBNEGF) - cp $(ROOT)/src/api/libnegf.h . - $(FC90) $(FC90OPT) $(LNOPT) $(SOURCES) $(INCLUDES) $(LIBNEGF) $(SKIT) $(LIBS) -o hello - -clean: - rm -rf ./hello - -distclean: clean - (cd $(ROOT)/src/api; make clean) - -$(LIBNEGF): - (cd $(ROOT)/src/api; make; make f95_binding) diff --git a/tests/f90intApi/GS/negf.in b/tests/f90intApi/GS/negf.in deleted file mode 100644 index e69de29..0000000 diff --git a/tests/f90intApi/H_imm.dat b/tests/f90intApi/H_imm.dat deleted file mode 100644 index 282e6ec..0000000 --- a/tests/f90intApi/H_imm.dat +++ /dev/null @@ -1,303 +0,0 @@ - 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Copyright (C) 2012 ! -!! ! -!! This file is part of libNEGF: a library for ! -!! Non Equilibrium Green's Function calculation ! -!! ! -!! Developers: Alessandro Pecchia, Gabriele Penazzi ! -!! Former Conctributors: Luca Latessa, Aldo Di Carlo ! -!! ! -!! libNEGF is free software: you can redistribute it and/or modify ! -!! it under the terms of the GNU Lesse General Public License as published ! -!! by the Free Software Foundation, either version 3 of the License, or ! -!! (at your option) any later version. ! -!! ! -!! You should have received a copy of the GNU Lesser General Public ! -!! License along with libNEGF. If not, see ! -!! . ! -!!--------------------------------------------------------------------------! - -include 'libnegf.h' -program hello - - implicit none - integer :: handler_size - integer, allocatable, dimension(:) :: handler1, handler2 - double precision :: current - character(500) :: realmat - character(500) :: imagmat - character(500) :: unitsH, unitsJ - - realmat="H_real.dat" - imagmat="H_imm.dat" - unitsH = "H" - unitsH = "J" - write(*,*) 'Libnegf API hello world' - - call negf_gethandlersize(handler_size) - - write(*,*) 'Handler size', handler_size - allocate(handler1(handler_size)) - allocate(handler2(handler_size)) - write(*,*) 'Create two libnegf instances' - call negf_init_session(handler1) - call negf_init_session(handler2) - call negf_init(handler1) - call negf_init(handler2) - write(*,*) 'Instance 1 at address',handler1 - write(*,*) 'Instance 2 at address',handler2 - write(*,*) 'Instance 1 will calculate tunneling' - call negf_read_hs(handler1, realmat, imagmat, 0) - call negf_set_S_id(handler1, 100) - call negf_read_input(handler1) - call negf_current(handler1, current, unitsH, unitsJ) - write(*,*) 'Instance 2 will calculate tunneling' - call negf_read_hs(handler2, realmat, imagmat, 0) - call negf_set_S_id(handler2, 100) - call negf_read_input(handler2) - call negf_current(handler2, current, unitsH, unitsJ) - write(*,*) 'Destroy negf' - call negf_destruct_libnegf(handler1) - call negf_destruct_session(handler1) - call negf_destruct_libnegf(handler2) - call negf_destruct_session(handler2) - write(*,*) 'Done' - -end program hello diff --git a/tests/f90intApi/negf.in b/tests/f90intApi/negf.in deleted file mode 100644 index 280080a..0000000 --- a/tests/f90intApi/negf.in +++ /dev/null @@ -1,24 +0,0 @@ -foo ! filename for real part of H -foo ! filename for imaginary part of H -foo ! Real part of S: if S == Id set 'identity' -foo ! Imaginary part of S: not used is S is idenity -foo 2 ! number of contacts. -foo 1 ! Number of PLs. If 0, next line is omitted -foo 60 ! PL end indexes -foo 80 100 ! Matrix end for each contact -foo 60 80 ! Surface end for each contact -foo 0 0 ! Ec Ev conduction/valence edges -foo 0 0 ! DEc DEv offset from edges -foo -3.0 3.0 0.01 ! Emin Emax Estep for tunneling -foo 0.0001 0.0001 ! kbT in units used (one per each contact, a unique temperature if no contacts are present) -foo 1 ! weight for k-point (multiplies quantities integrated in energy) -foo 20 20 ! Np on complex contour for electrons -foo 0 0 ! Np on complex contour for holes -foo 10 ! Np on real axis integration -foo 10 ! number of kT for cutoff fermi functions -foo 3 ! number of poles included in contour -foo 2 ! number of spin-degenerate states -foo 1e-05 ! delta used in G.F. -foo 0 ! number of LDOS intervals. Next containes LDOS indexes only if LDOS != 0 -foo 0.0 0.0 ! electrochemical potential of each contact -foo 0.0 0.0 ! electrochemical potential (holes)