From 9354de00c795304491703f44979eae0c9d2946ac Mon Sep 17 00:00:00 2001
From: Cyriac Kandoth <ckandoth@gmail.com>
Date: Tue, 21 May 2019 12:43:40 -0400
Subject: [PATCH] Add a Dockerfile for v0.2

---
 Dockerfile | 11 +++++++++++
 1 file changed, 11 insertions(+)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..8ea2e3f
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,11 @@
+FROM ubuntu:16.04
+
+RUN apt-get update && apt-get install -y git make build-essential zlib1g-dev libncurses5-dev libncursesw5-dev samtools=0.1.19-1ubuntu1 python-pysam libbam-dev
+
+RUN cd /tmp \
+  && git clone https://github.com/ding-lab/msisensor.git msisensor_install_dir \
+  && export SAMTOOLS_ROOT=/usr/lib/python2.7/dist-packages/pysam/include/samtools/ \
+  && cd msisensor_install_dir \
+  && git checkout 0.2 \
+  && make \
+  && mv /tmp/msisensor_install_dir/msisensor /usr/bin/