Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

no site labels in summary line plots when only one antibody per group #177

Closed
jbloom opened this issue Dec 27, 2024 · 0 comments · Fixed by #178
Closed

no site labels in summary line plots when only one antibody per group #177

jbloom opened this issue Dec 27, 2024 · 0 comments · Fixed by #178

Comments

@jbloom
Copy link
Contributor

jbloom commented Dec 27, 2024

See this issue: dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera#12
jbloom added a commit that referenced this issue Dec 28, 2024
@jbloom
add line plot site labels when only one antibody per group (addresses #…
bed32ed 
…177)
@jbloom jbloom mentioned this issue Dec 28, 2024
Merged
@jbloom jbloom linked a pull request Dec 28, 2024 that will close this issue
make a variety of improvements to the summary plots #178
Merged
jbloom added a commit that referenced this issue Dec 29, 2024
@jbloom
make a variety of improvements to the summary plots (#178)
680b7ce 
* add example summary plot w no heatmaps or antibody-escape mean

* Add option `no_mean_lineplot` to summaries to not show antibody-escape mean lineplot (see [this issue](dms-vep/Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS#136))

* Add option `lineplot_antibody_label_loc` ("right" or "top") for labels on antibody-escape lineplots ((see [this issue](dms-vep/Flu_H5_American-Wigeon_South-Carolina_2021-H5N1_DMS#136)).

* make `no_mean_lineplot` global `antibody_escape` option and recolor facet plots accordingly

* add line plot site labels when only one antibody per group (addresses #177)

* add `scale_lineplot_height` option

* some streamlining of summary notebook plotting

* add `per_antibody_selectable_heatmap` option

* `black` formatting

* re-run pipeline
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

make a variety of improvements to the summary plots dms-vep/dms-vep-pipeline-3
1 participant
@jbloom