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Makefile
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#############################################################################
# Makefile for building: STAGR
# Generated by qmake (2.01a) (Qt 4.7.4) on: Tue Mar 20 01:25:19 2012
# Project: STAGR.pro
# Template: app
# Command: /usr/bin/qmake -o Makefile STAGR.pro
#############################################################################
####### Compiler, tools and options
CC = gcc
CXX = g++
DEFINES = -DQT_WEBKIT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED
CFLAGS = -pipe -O2 -Wall -W -D_REENTRANT $(DEFINES)
CXXFLAGS = -pipe -O2 -Wall -W -D_REENTRANT $(DEFINES)
INCPATH = -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -I. -I. -I/usr/include/python2.7
LINK = g++
LFLAGS = -Wl,-O1
LIBS = $(SUBLIBS) -L/usr/lib/i386-linux-gnu -lQtGui -lQtCore -lpthread -lpython2.7
AR = ar cqs
RANLIB =
QMAKE = /usr/bin/qmake
TAR = tar -cf
COMPRESS = gzip -9f
COPY = cp -f
SED = sed
COPY_FILE = $(COPY)
COPY_DIR = $(COPY) -r
STRIP = strip
INSTALL_FILE = install -m 644 -p
INSTALL_DIR = $(COPY_DIR)
INSTALL_PROGRAM = install -m 755 -p
DEL_FILE = rm -f
SYMLINK = ln -f -s
DEL_DIR = rmdir
MOVE = mv -f
CHK_DIR_EXISTS= test -d
MKDIR = mkdir -p
####### Output directory
OBJECTS_DIR = ./
####### Files
SOURCES = blastnSettingsDialog.cpp \
blatSettingsDialog.cpp \
block.cpp \
chordDiagram.cpp \
contigData.cpp \
hsp.cpp \
layerArcs.cpp \
main.cpp \
MultipleMatchesDialog.cpp \
multipleMatchesView.cpp \
pathSettingsDialog.cpp \
plotLayer.cpp \
scriptEditDialog.cpp \
scriptHighlighter.cpp \
sequenceView.cpp \
STAGR.cpp \
Table.cpp moc_blastnSettingsDialog.cpp \
moc_blatSettingsDialog.cpp \
moc_chordDiagram.cpp \
moc_MultipleMatchesDialog.cpp \
moc_multipleMatchesView.cpp \
moc_pathSettingsDialog.cpp \
moc_scriptEditDialog.cpp \
moc_scriptHighlighter.cpp \
moc_sequenceView.cpp \
moc_STAGR.cpp \
moc_Table.cpp \
qrc_STAGR.cpp
OBJECTS = blastnSettingsDialog.o \
blatSettingsDialog.o \
block.o \
chordDiagram.o \
contigData.o \
hsp.o \
layerArcs.o \
main.o \
MultipleMatchesDialog.o \
multipleMatchesView.o \
pathSettingsDialog.o \
plotLayer.o \
scriptEditDialog.o \
scriptHighlighter.o \
sequenceView.o \
STAGR.o \
Table.o \
moc_blastnSettingsDialog.o \
moc_blatSettingsDialog.o \
moc_chordDiagram.o \
moc_MultipleMatchesDialog.o \
moc_multipleMatchesView.o \
moc_pathSettingsDialog.o \
moc_scriptEditDialog.o \
moc_scriptHighlighter.o \
moc_sequenceView.o \
moc_STAGR.o \
moc_Table.o \
qrc_STAGR.o
DIST = /usr/share/qt4/mkspecs/common/g++.conf \
/usr/share/qt4/mkspecs/common/unix.conf \
/usr/share/qt4/mkspecs/common/linux.conf \
/usr/share/qt4/mkspecs/qconfig.pri \
/usr/share/qt4/mkspecs/modules/qt_webkit_version.pri \
/usr/share/qt4/mkspecs/features/qt_functions.prf \
/usr/share/qt4/mkspecs/features/qt_config.prf \
/usr/share/qt4/mkspecs/features/exclusive_builds.prf \
/usr/share/qt4/mkspecs/features/default_pre.prf \
/usr/share/qt4/mkspecs/features/release.prf \
/usr/share/qt4/mkspecs/features/default_post.prf \
/usr/share/qt4/mkspecs/features/warn_on.prf \
/usr/share/qt4/mkspecs/features/qt.prf \
/usr/share/qt4/mkspecs/features/unix/thread.prf \
/usr/share/qt4/mkspecs/features/moc.prf \
/usr/share/qt4/mkspecs/features/resources.prf \
/usr/share/qt4/mkspecs/features/uic.prf \
/usr/share/qt4/mkspecs/features/yacc.prf \
/usr/share/qt4/mkspecs/features/lex.prf \
/usr/share/qt4/mkspecs/features/include_source_dir.prf \
STAGR.pro
QMAKE_TARGET = STAGR
DESTDIR =
TARGET = STAGR
first: all
####### Implicit rules
.SUFFIXES: .o .c .cpp .cc .cxx .C
.cpp.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.cc.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.cxx.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.C.o:
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<"
.c.o:
$(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<"
####### Build rules
all: Makefile $(TARGET)
$(TARGET): $(OBJECTS)
$(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(OBJCOMP) $(LIBS)
Makefile: STAGR.pro /usr/share/qt4/mkspecs/linux-g++/qmake.conf /usr/share/qt4/mkspecs/common/g++.conf \
/usr/share/qt4/mkspecs/common/unix.conf \
/usr/share/qt4/mkspecs/common/linux.conf \
/usr/share/qt4/mkspecs/qconfig.pri \
/usr/share/qt4/mkspecs/modules/qt_webkit_version.pri \
/usr/share/qt4/mkspecs/features/qt_functions.prf \
/usr/share/qt4/mkspecs/features/qt_config.prf \
/usr/share/qt4/mkspecs/features/exclusive_builds.prf \
/usr/share/qt4/mkspecs/features/default_pre.prf \
/usr/share/qt4/mkspecs/features/release.prf \
/usr/share/qt4/mkspecs/features/default_post.prf \
/usr/share/qt4/mkspecs/features/warn_on.prf \
/usr/share/qt4/mkspecs/features/qt.prf \
/usr/share/qt4/mkspecs/features/unix/thread.prf \
/usr/share/qt4/mkspecs/features/moc.prf \
/usr/share/qt4/mkspecs/features/resources.prf \
/usr/share/qt4/mkspecs/features/uic.prf \
/usr/share/qt4/mkspecs/features/yacc.prf \
/usr/share/qt4/mkspecs/features/lex.prf \
/usr/share/qt4/mkspecs/features/include_source_dir.prf \
/usr/lib/i386-linux-gnu/libQtGui.prl \
/usr/lib/i386-linux-gnu/libQtCore.prl
$(QMAKE) -o Makefile STAGR.pro
/usr/share/qt4/mkspecs/common/g++.conf:
/usr/share/qt4/mkspecs/common/unix.conf:
/usr/share/qt4/mkspecs/common/linux.conf:
/usr/share/qt4/mkspecs/qconfig.pri:
/usr/share/qt4/mkspecs/modules/qt_webkit_version.pri:
/usr/share/qt4/mkspecs/features/qt_functions.prf:
/usr/share/qt4/mkspecs/features/qt_config.prf:
/usr/share/qt4/mkspecs/features/exclusive_builds.prf:
/usr/share/qt4/mkspecs/features/default_pre.prf:
/usr/share/qt4/mkspecs/features/release.prf:
/usr/share/qt4/mkspecs/features/default_post.prf:
/usr/share/qt4/mkspecs/features/warn_on.prf:
/usr/share/qt4/mkspecs/features/qt.prf:
/usr/share/qt4/mkspecs/features/unix/thread.prf:
/usr/share/qt4/mkspecs/features/moc.prf:
/usr/share/qt4/mkspecs/features/resources.prf:
/usr/share/qt4/mkspecs/features/uic.prf:
/usr/share/qt4/mkspecs/features/yacc.prf:
/usr/share/qt4/mkspecs/features/lex.prf:
/usr/share/qt4/mkspecs/features/include_source_dir.prf:
/usr/lib/i386-linux-gnu/libQtGui.prl:
/usr/lib/i386-linux-gnu/libQtCore.prl:
qmake: FORCE
@$(QMAKE) -o Makefile STAGR.pro
dist:
@$(CHK_DIR_EXISTS) .tmp/STAGR1.0.0 || $(MKDIR) .tmp/STAGR1.0.0
$(COPY_FILE) --parents $(SOURCES) $(DIST) .tmp/STAGR1.0.0/ && $(COPY_FILE) --parents blastnSettingsDialog.h blatSettingsDialog.h block.h chordDiagram.h contigData.h hsp.h layerArcs.h MultipleMatchesDialog.h multipleMatchesView.h pathSettingsDialog.h plotLayer.h scriptEditDialog.h scriptHighlighter.h sequenceView.h STAGR.h Table.h .tmp/STAGR1.0.0/ && $(COPY_FILE) --parents STAGR.qrc .tmp/STAGR1.0.0/ && $(COPY_FILE) --parents blastnSettingsDialog.cpp blatSettingsDialog.cpp block.cpp chordDiagram.cpp contigData.cpp hsp.cpp layerArcs.cpp main.cpp MultipleMatchesDialog.cpp multipleMatchesView.cpp pathSettingsDialog.cpp plotLayer.cpp scriptEditDialog.cpp scriptHighlighter.cpp sequenceView.cpp STAGR.cpp Table.cpp .tmp/STAGR1.0.0/ && (cd `dirname .tmp/STAGR1.0.0` && $(TAR) STAGR1.0.0.tar STAGR1.0.0 && $(COMPRESS) STAGR1.0.0.tar) && $(MOVE) `dirname .tmp/STAGR1.0.0`/STAGR1.0.0.tar.gz . && $(DEL_FILE) -r .tmp/STAGR1.0.0
clean:compiler_clean
-$(DEL_FILE) $(OBJECTS)
-$(DEL_FILE) *~ core *.core
####### Sub-libraries
distclean: clean
-$(DEL_FILE) $(TARGET)
-$(DEL_FILE) Makefile
check: first
mocclean: compiler_moc_header_clean compiler_moc_source_clean
mocables: compiler_moc_header_make_all compiler_moc_source_make_all
compiler_moc_header_make_all: moc_blastnSettingsDialog.cpp moc_blatSettingsDialog.cpp moc_chordDiagram.cpp moc_MultipleMatchesDialog.cpp moc_multipleMatchesView.cpp moc_pathSettingsDialog.cpp moc_scriptEditDialog.cpp moc_scriptHighlighter.cpp moc_sequenceView.cpp moc_STAGR.cpp moc_Table.cpp
compiler_moc_header_clean:
-$(DEL_FILE) moc_blastnSettingsDialog.cpp moc_blatSettingsDialog.cpp moc_chordDiagram.cpp moc_MultipleMatchesDialog.cpp moc_multipleMatchesView.cpp moc_pathSettingsDialog.cpp moc_scriptEditDialog.cpp moc_scriptHighlighter.cpp moc_sequenceView.cpp moc_STAGR.cpp moc_Table.cpp
moc_blastnSettingsDialog.cpp: blastnSettingsDialog.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) blastnSettingsDialog.h -o moc_blastnSettingsDialog.cpp
moc_blatSettingsDialog.cpp: blatSettingsDialog.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) blatSettingsDialog.h -o moc_blatSettingsDialog.cpp
moc_chordDiagram.cpp: plotLayer.h \
contigData.h \
layerArcs.h \
chordDiagram.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) chordDiagram.h -o moc_chordDiagram.cpp
moc_MultipleMatchesDialog.cpp: Table.h \
hsp.h \
sequenceView.h \
block.h \
multipleMatchesView.h \
plotLayer.h \
contigData.h \
layerArcs.h \
MultipleMatchesDialog.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) MultipleMatchesDialog.h -o moc_MultipleMatchesDialog.cpp
moc_multipleMatchesView.cpp: hsp.h \
multipleMatchesView.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) multipleMatchesView.h -o moc_multipleMatchesView.cpp
moc_pathSettingsDialog.cpp: pathSettingsDialog.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) pathSettingsDialog.h -o moc_pathSettingsDialog.cpp
moc_scriptEditDialog.cpp: scriptHighlighter.h \
scriptEditDialog.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) scriptEditDialog.h -o moc_scriptEditDialog.cpp
moc_scriptHighlighter.cpp: scriptHighlighter.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) scriptHighlighter.h -o moc_scriptHighlighter.cpp
moc_sequenceView.cpp: block.h \
hsp.h \
sequenceView.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) sequenceView.h -o moc_sequenceView.cpp
moc_STAGR.cpp: MultipleMatchesDialog.h \
Table.h \
hsp.h \
sequenceView.h \
block.h \
multipleMatchesView.h \
plotLayer.h \
contigData.h \
layerArcs.h \
blastnSettingsDialog.h \
blatSettingsDialog.h \
scriptEditDialog.h \
scriptHighlighter.h \
pathSettingsDialog.h \
STAGR.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) STAGR.h -o moc_STAGR.cpp
moc_Table.cpp: hsp.h \
Table.h
/usr/bin/moc-qt4 $(DEFINES) $(INCPATH) Table.h -o moc_Table.cpp
compiler_rcc_make_all: qrc_STAGR.cpp
compiler_rcc_clean:
-$(DEL_FILE) qrc_STAGR.cpp
qrc_STAGR.cpp: STAGR.qrc \
MAC.fasta \
MIC.fasta \
output2dict.py \
icons/loadSequencesIcon.png \
icons/pythonIcon.png \
icons/stagrSettingsIcon.png \
icons/settingsIcon.png \
icons/startIcon.png
/usr/bin/rcc -name STAGR STAGR.qrc -o qrc_STAGR.cpp
compiler_image_collection_make_all: qmake_image_collection.cpp
compiler_image_collection_clean:
-$(DEL_FILE) qmake_image_collection.cpp
compiler_moc_source_make_all:
compiler_moc_source_clean:
compiler_uic_make_all:
compiler_uic_clean:
compiler_yacc_decl_make_all:
compiler_yacc_decl_clean:
compiler_yacc_impl_make_all:
compiler_yacc_impl_clean:
compiler_lex_make_all:
compiler_lex_clean:
compiler_clean: compiler_moc_header_clean compiler_rcc_clean
####### Compile
blastnSettingsDialog.o: blastnSettingsDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o blastnSettingsDialog.o blastnSettingsDialog.cpp
blatSettingsDialog.o: blatSettingsDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o blatSettingsDialog.o blatSettingsDialog.cpp
block.o: block.cpp block.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o block.o block.cpp
chordDiagram.o: chordDiagram.cpp chordDiagram.h \
plotLayer.h \
contigData.h \
layerArcs.h \
hsp.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o chordDiagram.o chordDiagram.cpp
contigData.o: contigData.cpp contigData.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o contigData.o contigData.cpp
hsp.o: hsp.cpp hsp.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o hsp.o hsp.cpp
layerArcs.o: layerArcs.cpp layerArcs.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o layerArcs.o layerArcs.cpp
main.o: main.cpp STAGR.h \
MultipleMatchesDialog.h \
Table.h \
hsp.h \
sequenceView.h \
block.h \
multipleMatchesView.h \
plotLayer.h \
contigData.h \
layerArcs.h \
blastnSettingsDialog.h \
blatSettingsDialog.h \
scriptEditDialog.h \
scriptHighlighter.h \
pathSettingsDialog.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o main.o main.cpp
MultipleMatchesDialog.o: MultipleMatchesDialog.cpp MultipleMatchesDialog.h \
Table.h \
hsp.h \
sequenceView.h \
block.h \
multipleMatchesView.h \
plotLayer.h \
contigData.h \
layerArcs.h \
chordDiagram.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o MultipleMatchesDialog.o MultipleMatchesDialog.cpp
multipleMatchesView.o: multipleMatchesView.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o multipleMatchesView.o multipleMatchesView.cpp
pathSettingsDialog.o: pathSettingsDialog.cpp pathSettingsDialog.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o pathSettingsDialog.o pathSettingsDialog.cpp
plotLayer.o: plotLayer.cpp plotLayer.h \
contigData.h \
layerArcs.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o plotLayer.o plotLayer.cpp
scriptEditDialog.o: scriptEditDialog.cpp scriptHighlighter.h \
scriptEditDialog.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o scriptEditDialog.o scriptEditDialog.cpp
scriptHighlighter.o: scriptHighlighter.cpp scriptHighlighter.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o scriptHighlighter.o scriptHighlighter.cpp
sequenceView.o: sequenceView.cpp sequenceView.h \
block.h \
hsp.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o sequenceView.o sequenceView.cpp
STAGR.o: STAGR.cpp STAGR.h \
MultipleMatchesDialog.h \
Table.h \
hsp.h \
sequenceView.h \
block.h \
multipleMatchesView.h \
plotLayer.h \
contigData.h \
layerArcs.h \
blastnSettingsDialog.h \
blatSettingsDialog.h \
scriptEditDialog.h \
scriptHighlighter.h \
pathSettingsDialog.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o STAGR.o STAGR.cpp
Table.o: Table.cpp Table.h \
hsp.h
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o Table.o Table.cpp
moc_blastnSettingsDialog.o: moc_blastnSettingsDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_blastnSettingsDialog.o moc_blastnSettingsDialog.cpp
moc_blatSettingsDialog.o: moc_blatSettingsDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_blatSettingsDialog.o moc_blatSettingsDialog.cpp
moc_chordDiagram.o: moc_chordDiagram.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_chordDiagram.o moc_chordDiagram.cpp
moc_MultipleMatchesDialog.o: moc_MultipleMatchesDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_MultipleMatchesDialog.o moc_MultipleMatchesDialog.cpp
moc_multipleMatchesView.o: moc_multipleMatchesView.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_multipleMatchesView.o moc_multipleMatchesView.cpp
moc_pathSettingsDialog.o: moc_pathSettingsDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_pathSettingsDialog.o moc_pathSettingsDialog.cpp
moc_scriptEditDialog.o: moc_scriptEditDialog.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_scriptEditDialog.o moc_scriptEditDialog.cpp
moc_scriptHighlighter.o: moc_scriptHighlighter.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_scriptHighlighter.o moc_scriptHighlighter.cpp
moc_sequenceView.o: moc_sequenceView.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_sequenceView.o moc_sequenceView.cpp
moc_STAGR.o: moc_STAGR.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_STAGR.o moc_STAGR.cpp
moc_Table.o: moc_Table.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o moc_Table.o moc_Table.cpp
qrc_STAGR.o: qrc_STAGR.cpp
$(CXX) -c $(CXXFLAGS) $(INCPATH) -o qrc_STAGR.o qrc_STAGR.cpp
####### Install
install: FORCE
uninstall: FORCE
FORCE: