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emdgroup/tnmf
Redesign fit interfaces

The current setting how the different fitting interfaces (batch, minibatch, stream) are implemented has several problems: - The variable naming is not consistent / misleading but cannot be changed (e.g. ...
enhancement
  • AdrianSosic
  • Opened 
    on Nov 12, 2021
  • #61

emdgroup/tnmf
Implement "reflect" mode in all backends

Need to think about how to handle even atom sizes.
enhancement
  • AdrianSosic
  • Opened 
    on Nov 10, 2021
  • #60

emdgroup/tnmf
add a CITATION.cff

See https://academia.stackexchange.com/a/172780, https://citation-file-format.github.io, https://github.com/citation-file-format/citation-file-format/blob/1.1.0/README.md#software-citation-metadata-required ...
  • dasmy
  • Opened 
    on Oct 5, 2021
  • #57

emdgroup/tnmf
Inconsistent flake8 errors

I am getting some flake8 errors locally that do not show up in the Github actions: ./build/lib/tnmf/tests/test_init.py:10:5: F403 from tnmf import * used; unable to detect undefined names from tnmf ...
  • AdrianSosic
  • Opened 
    on Aug 13, 2021
  • #55

emdgroup/tnmf
Streamlit sharing demo crashes for large data

The streamlit sharing demo simply crashes when exceeding the memory resources of the provided machine. Maybe we can identify during runtime if the demo is executed locally or in the cloud. In the latter ...
  • AdrianSosic
  • Opened 
    on Aug 13, 2021
  • #54

emdgroup/tnmf
Inhibition based on orthogonality of partial reconstruction

Currently, the inhibition gradient is computed in a way that it suppresses neighboring activations. Intuitively, we might instead want to suppress activations that lead to overlapping atoms in the reconstruction. ...
enhancement
  • dasmy
  • Opened 
    on Jul 29, 2021
  • #53

emdgroup/tnmf
Inhibition does not consider reconstruction mode

Presumably, the convolution, that is used to compute the inhibition gradient, does not consider the reconstruction mode. Potentially, this is not correct: At least intuitively, I would expect that for ...
bug
question
  • dasmy
  • 1
  • Opened 
    on Jul 29, 2021
  • #52

emdgroup/tnmf
Links in Readme have to be updated

...after the repo became public and GitHub pages have been set up
  • dasmy
  • Opened 
    on Jul 12, 2021
  • #39

emdgroup/tnmf
Code Coverage of unit tests

Should be analyzed and monitored.
  • dasmy
  • Opened 
    on Jun 18, 2021
  • #30

emdgroup/tnmf
Need to unit-test examples and demo

Currently, we would not recognize if these fail, e.g. due to interface incompatibilities. Easiest might be to create dummy unit tests that set matplotlib into non-interactive mode and run the examples ...
  • dasmy
  • Opened 
    on Jun 18, 2021
  • #29
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