Leaf names visible despite show_leaf_name=False

[michaelgruenstaeudl]

The following code is supposed to visualize a minimalistic tree next to a sequence alignment, with the tree leaves displayed as aligned. Especially note the setting ts.show_leaf_name=False

from ete3 import PhyloTree, TreeStyle, TextFace
tre = "(A:3,(B:1,C:6));"
aln = """
>A
ATGC
>B
GCAT
>C
AGCT
"""
t = PhyloTree(tre, alignment=aln, alg_format="fasta")
for l in t.iter_leaves():
    l.add_face(TextFace(l.name), 0, position='aligned')
ts = TreeStyle()
ts.show_leaf_name=False
ts.draw_guiding_lines=True
t.show(tree_style=ts)

However, the above code displays both the original leaf names as well as the new (i.e., aligned) ones.

I wish to display only the new (i.e., aligned) leaf names. What part of the above code is incorrect?

[Yogesh1-11]

why cant i use "def layout(node):" node and leaves have some different definition?
leaf and node both are not working. please see the code attached
from ete3 import PhyloTree, faces, AttrFace, TreeStyle, NodeStyle
tre = "(A:3,(B:1,C:6));"
aln = """

A
ATGC
B
GCAT
C
AGCT
"""
t = PhyloTree(tre, alignment=aln, alg_format="fasta")
t = PhyloTree(tre, alignment=aln, alg_format="fasta")
positions_to_color = [2,3]
def layout(leaf):
sequence = leaf.name # Access the sequence directly from the leaf name
print("Processing leaf:", leaf.name) # Print the leaf name being processed

# Color specified positions
for position in positions_to_color:
    aa = sequence[position - 1]  # Access the character at the position
    print(f"  - Coloring position {position} with amino acid: {aa}")  # Print position and amino acid
    color = faces._aabgcolors.get(aa, "#FFFFFF")

ts = TreeStyle()
ts.show_leaf_name = False
ts.draw_guiding_lines = True
t.set_style({"layout_fn": layout})
t.show(tree_style=ts)

[Tarasovk49]

Hi, Michael!
Never got this problem using ete3, but recently I switched to ete4, rewrote the code for the particular tree I used to render with ete3 and got same issue as you.
What solved it for me was changing the default value of TreeStyle.show_leaf_name to False:

ete/ete4/treeview/main.py

Line 427 in 642f67d

self.show_leaf_name = True

Though, if I want the names to be shown, I just add ts.show_leaf_name = True in my code and it works perfect.
I believe you may find similar lines in ete3 code and do the same.
Good luck!