Markers for Trajectory Branches.

[hzuzu]

One of our researchers wants markers for each of the Trajectory branches in Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis paper (Main Fig 1 E in the ) eg. Markers for EVL/Periderm, Epidermis, Diencephalon, etc. I was wondering if the genes in gene modules in Supp Table S2 can be used as markers for the specific modules as shown in Supp Figure S4, eg. For Primordial Germ cells (PGC’s) can I use genes from gene modules 4,0,13,19,12,21,17?
Or is there a way to get cells in each of those branches? I can do DE to get markers.

Thank you!