We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
pseudotime.logistic <- pseudotimeDetermineLogistic(hydra.en, pseudotime="pseudotime", optimal.cells.forward = 0, max.cells.back = 500, pseudotime.direction = "<") tm.biased <- as.matrix(pseudotimeWeightTransitionMatrix(hydra.en, pseudotime="pseudotime", logistic.params = pseudotime.logistic, pseudotime.direction="<"))
walks.en <- simulateRandomWalksFromTips(hydra.en, "tip.clusters", root.cells=root.cells, transition.matrix=tm.biased, n.per.tip=walks.to.do, root.visits=1)
This is in the supplement.pdf, but I can't find walks.to.do. So can you tell me that how to set the parameter of n.per.tip?
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Bias the transition probabilities by cellular pseudotime
pseudotime.logistic <- pseudotimeDetermineLogistic(hydra.en, pseudotime="pseudotime", optimal.cells.forward = 0, max.cells.back = 500, pseudotime.direction = "<")
tm.biased <- as.matrix(pseudotimeWeightTransitionMatrix(hydra.en, pseudotime="pseudotime", logistic.params = pseudotime.logistic, pseudotime.direction="<"))
Simulate biased random walks and load them into the object
walks.en <- simulateRandomWalksFromTips(hydra.en, "tip.clusters", root.cells=root.cells, transition.matrix=tm.biased, n.per.tip=walks.to.do, root.visits=1)
This is in the supplement.pdf, but I can't find walks.to.do. So can you tell me that how to set the parameter of n.per.tip?
The text was updated successfully, but these errors were encountered: