diff --git a/README.md b/README.md index dc351bf..3c2d6c1 100644 --- a/README.md +++ b/README.md @@ -27,7 +27,6 @@ install.packages("RFishBC") The most recent development version may be installed from GitHub with - ```r if (!require('remotes')) install.packages('remotes'); require('remotes') remotes::install_github('fishr-core-team/RFishBC') diff --git a/docs/404.html b/docs/404.html index a691008..5c88f17 100644 --- a/docs/404.html +++ b/docs/404.html @@ -39,7 +39,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html new file mode 100644 index 0000000..34568aa --- /dev/null +++ b/docs/CODE_OF_CONDUCT.html @@ -0,0 +1,148 @@ + +Contributor Covenant Code of Conduct • RFishBC + + +
+
+ + + +
+
+
+

Contributor Covenant Code of Conduct

+
+ +
+ +
+

Our Pledge

+

In the interest of fostering an open and welcoming environment, we as contributors and maintainers pledge to making participation in our project and our community a harassment-free experience for everyone, regardless of age, body size, disability, ethnicity, sex characteristics, gender identity and expression, level of experience, education, socio-economic status, nationality, personal appearance, race, religion, or sexual identity and orientation.

+
+
+

Our Standards

+

Examples of behavior that contributes to creating a positive environment include:

+
  • Using welcoming and inclusive language
    • +
  • Being respectful of differing viewpoints and experiences
    • +
  • Gracefully accepting constructive criticism
    • +
  • Focusing on what is best for the community
    • +
  • Showing empathy towards other community members
    • +

Examples of unacceptable behavior by participants include:

+
  • The use of sexualized language or imagery and unwelcome sexual attention or advances
    • +
  • Trolling, insulting/derogatory comments, and personal or political attacks
    • +
  • Public or private harassment
    • +
  • Publishing others’ private information, such as a physical or electronic address, without explicit permission
    • +
  • Other conduct which could reasonably be considered inappropriate in a professional setting
    • +
+
+

Our Responsibilities

+

Project maintainers are responsible for clarifying the standards of acceptable behavior and are expected to take appropriate and fair corrective action in response to any instances of unacceptable behavior.

+

Project maintainers have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct, or to ban temporarily or permanently any contributor for other behaviors that they deem inappropriate, threatening, offensive, or harmful.

+
+
+

Scope

+

This Code of Conduct applies both within project spaces and in public spaces when an individual is representing the project or its community. Examples of representing a project or community include using an official project e-mail address, posting via an official social media account, or acting as an appointed representative at an online or offline event. Representation of a project may be further defined and clarified by project maintainers.

+
+
+

Enforcement

+

Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by contacting members of fishR-core-team. All complaints will be reviewed and investigated and will result in a response that is deemed necessary and appropriate to the circumstances. The project team is obligated to maintain confidentiality with regard to the reporter of an incident. Further details of specific enforcement policies may be posted separately.

+

Project maintainers who do not follow or enforce the Code of Conduct in good faith may face temporary or permanent repercussions as determined by other members of the project’s leadership.

+
+
+

Attribution

+

This Code of Conduct is adapted from the Contributor Covenant, version 1.4, available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html

+

For answers to common questions about this code of conduct, see https://www.contributor-covenant.org/faq

+
+
+ +
+ + + +
+ + + +
+ + + + + + + + diff --git a/docs/articles/BCCalc.html b/docs/articles/BCCalc.html index 893be96..4c91220 100644 --- a/docs/articles/BCCalc.html +++ b/docs/articles/BCCalc.html @@ -40,7 +40,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -109,7 +109,7 @@

Compute Back-Calculated Lengths

Derek H. Ogle

-

2022-02-12

+

2022-02-19

Source: vignettes/BCCalc.Rmd diff --git a/docs/articles/BCIntro.html b/docs/articles/BCIntro.html index eef19bd..72a9e82 100644 --- a/docs/articles/BCIntro.html +++ b/docs/articles/BCIntro.html @@ -40,7 +40,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -109,7 +109,7 @@

Short Introduction to Back-Calculation

Derek H. Ogle

-

2022-02-12

+

2022-02-19

Source: vignettes/BCIntro.Rmd diff --git a/docs/articles/BCWorkflow.html b/docs/articles/BCWorkflow.html index 0716d51..9e948c8 100644 --- a/docs/articles/BCWorkflow.html +++ b/docs/articles/BCWorkflow.html @@ -40,7 +40,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -109,7 +109,7 @@

Suggested Workflow for Back-Calculation

Derek H. Ogle

-

2022-02-12

+

2022-02-19

Source: vignettes/BCWorkflow.Rmd diff --git a/docs/articles/Other.html b/docs/articles/Other.html index 61ef0d6..2ecb627 100644 --- a/docs/articles/Other.html +++ b/docs/articles/Other.html @@ -40,7 +40,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -109,7 +109,7 @@

Other Features / Common Questions

Derek H. Ogle

-

2022-02-12

+

2022-02-19

Source: vignettes/Other.Rmd diff --git a/docs/articles/collectRadiiData.html b/docs/articles/collectRadiiData.html index dc550da..698a830 100644 --- a/docs/articles/collectRadiiData.html +++ b/docs/articles/collectRadiiData.html @@ -40,7 +40,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -109,7 +109,7 @@

Collect radial measurements from a calcified structure by interactively selecting annuli

Derek H. Ogle

-

2022-02-12

+

2022-02-19

Source: vignettes/collectRadiiData.Rmd diff --git a/docs/articles/index.html b/docs/articles/index.html index bcfdecb..3af40c4 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/articles/seeRadiiData.html b/docs/articles/seeRadiiData.html index 4798638..4f38ceb 100644 --- a/docs/articles/seeRadiiData.html +++ b/docs/articles/seeRadiiData.html @@ -40,7 +40,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -109,7 +109,7 @@

Visualize Points Selected on a Calcified Structure

Derek H. Ogle

-

2022-02-12

+

2022-02-19

Source: vignettes/seeRadiiData.Rmd diff --git a/docs/authors.html b/docs/authors.html index e29f3dc..2aa25e2 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -92,12 +92,12 @@

Citation

-

Ogle, D.H. 2022. RFishBC. R package version 0.2.4, https://derekogle.com/RFishBC/.

+

Ogle, D.H. 2022. RFishBC. R package version 0.2.4.9000, https://derekogle.com/RFishBC/.

@Manual{,
   title = {RFishBC},
   author = {Derek H. Ogle},
   year = {2022},
-  note = {R package version 0.2.4},
+  note = {R package version 0.2.4.9000},
   url = {https://derekogle.com/RFishBC/},
 }
diff --git a/docs/index.html b/docs/index.html index 004e21f..01c5f9a 100644 --- a/docs/index.html +++ b/docs/index.html @@ -44,7 +44,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -118,17 +118,27 @@

RFishBC

Use

-

General desriptions for using RFishBC are under the Vignettes tab at the top of the page. I suggest at least quickly reading each vignette to get an overall feel for RFishBC and then following the workflow suggestions in the last vignette. Detailed descriptions for each function are under the Reference tab at the top of the page.

+

General desriptions for using RFishBC are under the Vignettes tab at the top of this page. I suggest at least quickly reading each vignette to get an overall feel for RFishBC and then following the workflow suggestions in the last vignette. Detailed descriptions for each function are under the Reference tab at the top of that page.

Installation

-

RFishBC is now available on CRAN and can be installed as usual from there. The most recent development version (on GitHub) of RFishBC may be installed by running the two lines below in your R console.

+

The most recent stable version (on CRAN) of RFishBC may be installed with

+install.packages("RFishBC")
+

The most recent development version may be installed from GitHub with

+
 if (!require('remotes')) install.packages('remotes'); require('remotes')
-remotes::install_github('droglenc/RFishBC')
+remotes::install_github('fishr-core-team/RFishBC')

You may need to have R Tools installed on your system to use the two lines above. See the instructions for (R Tools for Windows or R Tools for Mac OS X). Additionally, you may need the X11 graphics functionality if using Mac OS.

+
+

Questions / Comments / Problems or Contributions +

+

Report questions, comments, or bug reports on the issues page.

+

We are always looking for others to contribute to RFishBC. Please feel free to make a pull request via GitHub or to contact the maintainers.

+

Please adhere to the Code of Conduct.

+
@@ -150,6 +160,12 @@

License

+
+

Community

+ +

Citation

@@ -172,8 +188,8 @@

Dev status

  • DOI
  • CRAN Status
  • License
    • -
  • R-CMD-check
    • -
  • Codecov test coverage
    • +
  • R-CMD-check
    • +
  • Codecov test coverage
  • CRAN RStudio mirror downloads rateCRAN RSTudio mirror downloads total
  • Rdoc
    • diff --git a/docs/logo.png b/docs/logo.png index 8cd64de..0bae7c9 100644 Binary files a/docs/logo.png and b/docs/logo.png differ diff --git a/docs/news/index.html b/docs/news/index.html index e729be8..6d12ed3 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000
    @@ -79,7 +79,13 @@

    Changelog

    -

    RFishBC 0.2.4 12-Feb-2022

    +

    RFishBC 0.2.5 ongoing

    +
    +
    +

    RFishBC 0.2.4 12-Feb-20222022-02-13

    diff --git a/docs/reference/RFBCoptions.html b/docs/reference/RFBCoptions.html index 86fab55..84bd997 100644 --- a/docs/reference/RFBCoptions.html +++ b/docs/reference/RFBCoptions.html @@ -18,7 +18,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/RFishBC.html b/docs/reference/RFishBC.html index 7897c72..bf74b38 100644 --- a/docs/reference/RFishBC.html +++ b/docs/reference/RFishBC.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/SMBassWB1.html b/docs/reference/SMBassWB1.html index 4024314..8106405 100644 --- a/docs/reference/SMBassWB1.html +++ b/docs/reference/SMBassWB1.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/SMBassWB2.html b/docs/reference/SMBassWB2.html index 5e511e9..16efc40 100644 --- a/docs/reference/SMBassWB2.html +++ b/docs/reference/SMBassWB2.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/StdIntLit.html b/docs/reference/StdIntLit.html index 25d408c..b2283b8 100644 --- a/docs/reference/StdIntLit.html +++ b/docs/reference/StdIntLit.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/aStandard.html b/docs/reference/aStandard.html index 1a80176..9bc32b0 100644 --- a/docs/reference/aStandard.html +++ b/docs/reference/aStandard.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/addNote.html b/docs/reference/addNote.html index 6b2d6b2..f6ba137 100644 --- a/docs/reference/addNote.html +++ b/docs/reference/addNote.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/addRadCap.html b/docs/reference/addRadCap.html index b9dd5b3..376c775 100644 --- a/docs/reference/addRadCap.html +++ b/docs/reference/addRadCap.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/backCalc.html b/docs/reference/backCalc.html index 7ed73f7..6e6a874 100644 --- a/docs/reference/backCalc.html +++ b/docs/reference/backCalc.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/bcFuns.html b/docs/reference/bcFuns.html index 4317984..30057ed 100644 --- a/docs/reference/bcFuns.html +++ b/docs/reference/bcFuns.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 @@ -123,8 +123,8 @@

    Examples

    #> DONE("Using the Dahl-Lea model.") #> (Ri/Rcap) * Lcap #> } -#> <bytecode: 0x00000000212cbd50> -#> <environment: 0x00000000212e7420> +#> <bytecode: 0x000000002148de88> +#> <environment: 0x00000000214a57f8> bcm1(20,10,40) #> v Using the Dahl-Lea model. #> [1] 5 @@ -144,8 +144,8 @@

    Examples

    #> DONE("Using the Fraser-Lee model with a=", a, ".") #> a + (Lcap - a) * (Ri/Rcap) #> } -#> <bytecode: 0x00000000212cb810> -#> <environment: 0x0000000021757f70> +#> <bytecode: 0x000000002148d948> +#> <environment: 0x00000000217e7ce0> bcm2(lencap,rad,radcap,2) # demonstrated with a=2 #> v Using the Fraser-Lee model with a=2. #> [1] 26.5000 51.0000 75.5000 76.0000 125.3333 diff --git a/docs/reference/combineData.html b/docs/reference/combineData.html index 72ad339..9aacc77 100644 --- a/docs/reference/combineData.html +++ b/docs/reference/combineData.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/digitizeRadii.html b/docs/reference/digitizeRadii.html index 6ea907a..d547039 100644 --- a/docs/reference/digitizeRadii.html +++ b/docs/reference/digitizeRadii.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/figures/logo.png b/docs/reference/figures/logo.png index 8cd64de..0bae7c9 100644 Binary files a/docs/reference/figures/logo.png and b/docs/reference/figures/logo.png differ diff --git a/docs/reference/findNotes.html b/docs/reference/findNotes.html index 10b3c49..e999ccc 100644 --- a/docs/reference/findNotes.html +++ b/docs/reference/findNotes.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/findScalingFactor.html b/docs/reference/findScalingFactor.html index f244175..dbb08c8 100644 --- a/docs/reference/findScalingFactor.html +++ b/docs/reference/findScalingFactor.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/gConvert.html b/docs/reference/gConvert.html index 15c8da9..2be52e3 100644 --- a/docs/reference/gConvert.html +++ b/docs/reference/gConvert.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/getID.html b/docs/reference/getID.html index 1b8898b..ccc4a67 100644 --- a/docs/reference/getID.html +++ b/docs/reference/getID.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/index.html b/docs/reference/index.html index f7122d9..91fa977 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/listFiles.html b/docs/reference/listFiles.html index 92c7876..1d443e5 100644 --- a/docs/reference/listFiles.html +++ b/docs/reference/listFiles.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/reference/showDigitizedImage.html b/docs/reference/showDigitizedImage.html index df03357..f124732 100644 --- a/docs/reference/showDigitizedImage.html +++ b/docs/reference/showDigitizedImage.html @@ -17,7 +17,7 @@ RFishBC - 0.2.4 + 0.2.4.9000 diff --git a/docs/sitemap.xml b/docs/sitemap.xml index a6aba00..f32e9e8 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -42,6 +42,9 @@ http://derekogle.com/RFishBC/authors.html + + http://derekogle.com/RFishBC/CODE_OF_CONDUCT.html + http://derekogle.com/RFishBC/index.html