From 83e28127be2cc677976329139898c4a4caa9e7a3 Mon Sep 17 00:00:00 2001 From: CH Albach Date: Fri, 20 Nov 2015 16:02:58 -0800 Subject: [PATCH] Revert "Added Fragment to Reads" This reverts commit 468b5af6555c2f88b66a3d0fdb36c3052ae69738. --- src/main/resources/avro/reads.avdl | 18 ------------------ 1 file changed, 18 deletions(-) diff --git a/src/main/resources/avro/reads.avdl b/src/main/resources/avro/reads.avdl index d45263bb..af843128 100644 --- a/src/main/resources/avro/reads.avdl +++ b/src/main/resources/avro/reads.avdl @@ -176,18 +176,6 @@ record LinearAlignment { array cigar = []; } -/** -A fragment represents a contiguous stretch of a DNA or RNA molecule. Reads can -be associated with a fragment to specify they derive from the same molecule. -TODO: this Fragment object is essentially unused, and may be removed in a future PR. -*/ -record Fragment { - - /** The fragment ID. */ - string id; - -} - /** Each read alignment describes an alignment with additional information about the fragment and the read. A read alignment object is equivalent to a @@ -213,12 +201,6 @@ record ReadAlignment { // fragment attributes - /** - The fragment ID that this ReadAlignment belongs to. - TODO: this is the only reference to the Fragment object, which may be removed in a future PR. - */ - string fragmentId; - /** The fragment name. Equivalent to QNAME (query template name) in SAM. */ string fragmentName;