Add a bit of genomic intro to the basic vignette

[gregorgorjanc]

We can pull some material from the MOOC!

The idea is that we emphasise chromosomes and chromosome copies as it seems that many people don't know this well enough (even though they should as this is the basics of genetics).

[RosCraddock]

Happy to be assigned to this issue.

[gregorgorjanc]

@RosCraddock perfect!

@gaynorr we spoke about this a while ago so I can not recall if we said that we should port some of introductory MOOC material into https://github.com/gaynorr/AlphaSimR/blob/master/vignettes/intro.Rmd or do we need another separate genomics vignette?

[gregorgorjanc]

@RosCraddock @gaynorr I just gave you access to the AlphaSimR MOOC material so you can see what R vignettes/markdown material we have in there.

[RosCraddock]

@gregorgorjanc I have completed the genomic vignette: RosCraddock@ad0ab7f.
Hopefully, that covers what you were thinking. Any feedback would be great!

[gregorgorjanc]

@RosCraddock this looks great!

Before I jump into editor OCD mode, one essential thing that’s missing is some AlphaSimR code.

I think that for each section (except the last) we need some AlphaSimR code to show the key concepts. You can lift from the MOOC vignettes as much as you want but I suggest you limit to bare minimum and then we point people to the course for more and for exercises etc.

Happy to revise the vignette when you add the code;)

[RosCraddock]

@gregorgorjanc Fair point! I have added some AlphaSimR code now. I will share it here, but if it is easiest, I can create a pull request to your fork or AlphaSimR.
https://github.com/RosCraddock/AlphaSimR/blob/devel/vignettes/articles/Genome.Rmd

[gregorgorjanc]

Yes, please add the to the PR - best to use in line commenting

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