From 43042cc7de09861ea9529c20614a1593f55b6d8f Mon Sep 17 00:00:00 2001 From: pgaudet Date: Mon, 9 Dec 2024 16:35:05 +0100 Subject: [PATCH] Update download-ontology.md --- _docs/download-ontology.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_docs/download-ontology.md b/_docs/download-ontology.md index 07d9e620..a295aabc 100644 --- a/_docs/download-ontology.md +++ b/_docs/download-ontology.md @@ -15,7 +15,7 @@ Three versions of the ontology are available as described below. |-------|--------------|-------------|-------------|-------------| |**go-basic**| The basic version of the GO, filtered so that the ontology is acyclic. With this version, annotations can safely be propagated up the graph. The relations included are *is a*, *part of*, *regulates*, *negatively regulates* and *positively regulates*. This version excludes relationships that cross the 3 GO hierarchies. This version is recommended for most GO-based annotation tools.| [go-basic.obo file](https://purl.obolibrary.org/obo/go/go-basic.obo){:target="blank"} |  [go-basic.json file](https://purl.obolibrary.org/obo/go/go-basic.json){:target="blank"} | [go-basic.owl file](https://purl.obolibrary.org/obo/go/go-basic.owl){:target="blank"} |  |**go** | Core ontology. This version includes additional relationships compared to **go-basic**, including *has_part* and *occurs_in*. These relations can link terms from different aspects of GO and create cycles in the ontology, so not all the relations are safe for propagating annotations. This version excludes relationships to external ontologies.| [go.obo file](https://purl.obolibrary.org/obo/go.obo){:target="blank"} |  [go.json file](https://purl.obolibrary.org/obo/go.json){:target="blank"} | [go.owl file](https://purl.obolibrary.org/obo/go.owl){:target="blank"} | -|**go-plus** | This is the fully axiomatised version of the GO. It includes cross-ontology relationships (axioms) and imports additional required ontologies including [ChEBI](https://www.ebi.ac.uk/chebi/){:target="blank"}, [Cell Ontology](http://www.obofoundry.org/ontology/cl.html){:target="blank"} and [Uberon](http://uberon.github.io/){:target="blank"}. It also includes to complete set of relationship types including some not present in **go**. This version is only available in [OWL](https://www.w3.org/OWL/){:target="blank"} format. | NA | [go-plus.json](https://purl.obolibrary.org/obo/go/extensions/go-plus.json){:target="blank"} | [go-plus.owl file](https://purl.obolibrary.org/obo/go/extensions/go-plus.owl){:target="blank"} | +|**go-plus** | This is the fully axiomatised version of the GO. It includes cross-ontology relationships (axioms) and imports additional required ontologies including [ChEBI](https://www.ebi.ac.uk/chebi/){:target="blank"}, [Cell Ontology](http://www.obofoundry.org/ontology/cl.html){:target="blank"} and [Uberon](http://uberon.github.io/){:target="blank"}. It also includes to complete set of relationship types including some not present in **go**. This version is not avilable in .obo format. | NA | [go-plus.json](https://purl.obolibrary.org/obo/go/extensions/go-plus.json){:target="blank"} | [go-plus.owl file](https://purl.obolibrary.org/obo/go/extensions/go-plus.owl){:target="blank"} | ## GO subset files