diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index 7ff2ba6060..bccdab1ff5 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -51196,7 +51196,7 @@ xref: Wikipedia:Norepinephrine_transporter intersection_of: GO:0015293 ! symporter activity intersection_of: has_primary_input CHEBI:17996 ! chloride intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -intersection_of: has_primary_input CHEBI:33569 ! noradrenaline +intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline relationship: part_of GO:0051620 ! norepinephrine uptake [Term] @@ -96144,7 +96144,7 @@ synonym: "phytochromobilin biosynthesis" EXACT [] synonym: "phytochromobilin formation" EXACT [] synonym: "phytochromobilin synthesis" EXACT [] intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:26116 ! phytochromobilin +intersection_of: has_primary_output CHEBI:57439 ! (3Z)-phytochromobilin [Term] id: GO:0010025 @@ -115453,7 +115453,7 @@ synonym: "levarterenol transport" EXACT [] synonym: "noradrenaline transport" EXACT [] is_a: GO:0051937 ! catecholamine transport intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33569 ! noradrenaline +intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline [Term] id: GO:0015875 @@ -189618,7 +189618,7 @@ def: "The chemical reactions and pathways involving O-glucosylated derivatives o synonym: "kaempferol O-glucoside metabolism" EXACT [] is_a: GO:0016137 ! glycoside metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:30200 ! kaempferol 3-O-beta-D-glucoside +intersection_of: has_primary_input_or_output CHEBI:169942 ! kaempferol 3-0-beta-D-glucoside(1-) [Term] id: GO:0033330 @@ -189633,7 +189633,7 @@ xref: MetaCyc:PWY-5320 is_a: GO:0016138 ! glycoside biosynthetic process is_a: GO:0033329 ! kaempferol O-glucoside metabolic process intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:30200 ! kaempferol 3-O-beta-D-glucoside +intersection_of: has_primary_output CHEBI:169942 ! kaempferol 3-O-beta-D-glucoside(1-) [Term] id: GO:0033331 @@ -233830,7 +233830,7 @@ synonym: "noradrenaline metabolic process" EXACT [] synonym: "noradrenaline metabolism" EXACT [] synonym: "norepinephrine metabolism" EXACT [] intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33569 ! noradrenaline +intersection_of: has_primary_input_or_output CHEBI:72587 ! (R)-noradrenaline [Term] id: GO:0042416 @@ -233905,7 +233905,7 @@ synonym: "norepinephrine biosynthesis" EXACT [] synonym: "norepinephrine formation" EXACT [] synonym: "norepinephrine synthesis" EXACT [] intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33569 ! noradrenaline +intersection_of: has_primary_output CHEBI:72587 ! (R)-noradrenaline [Term] id: GO:0042422 @@ -233921,7 +233921,7 @@ synonym: "norepinephrine catabolism" EXACT [] synonym: "norepinephrine degradation" EXACT [] xref: Wikipedia:Norepinephrine#Degradation intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33569 ! noradrenaline +intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline [Term] id: GO:0042423 @@ -248949,7 +248949,7 @@ namespace: molecular_function def: "Binding to suramin, a naphthalenesulfonic acid compound which is used in the treatment of diseases caused by trypanosomes and worms." [GOC:jl, Wikipedia:Suramin] synonym: "Germanin binding" EXACT [] intersection_of: GO:0005488 ! binding -intersection_of: has_input CHEBI:45906 ! suramin +intersection_of: has_input CHEBI:180911 ! suramin(6-) [Term] id: GO:0043927 @@ -296299,7 +296299,7 @@ def: "The regulated release of norepinephrine by a cell. Norepinephrine is a cat synonym: "noradrenaline secretion" EXACT [] is_a: GO:0023061 ! signal release intersection_of: GO:0046903 ! secretion -intersection_of: has_primary_input CHEBI:33569 ! noradrenaline +intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline [Term] id: GO:0048244 @@ -320078,7 +320078,7 @@ namespace: molecular_function def: "Binding to norepinephrine, (3,4-dihydroxyphenyl-2-aminoethanol), a hormone secreted by the adrenal medulla and a neurotransmitter in the sympathetic peripheral nervous system and in some tracts of the CNS. It is also the biosynthetic precursor of epinephrine." [GOC:ai] synonym: "noradrenaline binding" EXACT [] intersection_of: GO:0005488 ! binding -intersection_of: has_input CHEBI:33569 ! noradrenaline +intersection_of: has_input CHEBI:72587 ! (R)-noradrenaline [Term] id: GO:0051381 @@ -322765,7 +322765,7 @@ synonym: "noradrenaline uptake" EXACT [] synonym: "norepinephrine import" EXACT [GOC:dph, GOC:tb] synonym: "norepinephrine reuptake" EXACT [] intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:33569 ! noradrenaline +intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline intersection_of: has_target_end_location GO:0005622 ! intracellular anatomical structure intersection_of: has_target_start_location GO:0005576 ! extracellular region @@ -381495,7 +381495,7 @@ comment: Note that epinephrine and norepinephrine are ligands for the same recep synonym: "response to noradrenaline stimulus" EXACT [GOC:mah] synonym: "response to norepinephrine stimulus" EXACT [GOC:dos] intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_input CHEBI:33569 ! noradrenaline +intersection_of: has_input CHEBI:72587 ! (R)-noradrenaline created_by: mah creation_date: 2010-09-13T03:31:53Z @@ -381507,7 +381507,7 @@ def: "Any process that results in a change in state or activity of a cell (in te comment: Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors. synonym: "cellular response to noradrenaline stimulus" EXACT [GOC:mah] intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_input CHEBI:33569 ! noradrenaline +intersection_of: has_input CHEBI:72587 ! (R)-noradrenaline created_by: mah creation_date: 2010-09-13T03:33:32Z @@ -420867,7 +420867,7 @@ namespace: biological_process def: "The vesicular release of noradrenaline (norepinephrine) a presynapse, across a chemical synapse, the subsequent activation of noradrenaline receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse." [GOC:dos, GOC:dph] synonym: "noradrenergic synaptic transmission" EXACT [] is_a: GO:0007268 ! chemical synaptic transmission -relationship: has_participant CHEBI:33569 ! noradrenaline +relationship: has_participant CHEBI:72587 ! (R)-noradrenaline created_by: dos creation_date: 2017-07-05T14:36:55Z @@ -473010,7 +473010,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving bacitracin A." [GOC:TermGenie, GOC:yaf, UniPathway:UPA00179] synonym: "bacitracin A metabolism" EXACT [GOC:TermGenie] intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35862 ! bacitracin A +intersection_of: has_primary_input_or_output CHEBI:184381 ! bacitracin A zwitterion created_by: yaf creation_date: 2012-07-11T03:15:56Z @@ -473023,7 +473023,7 @@ synonym: "bacitracin A breakdown" EXACT [GOC:TermGenie] synonym: "bacitracin A catabolism" EXACT [GOC:TermGenie] synonym: "bacitracin A degradation" EXACT [GOC:TermGenie] intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35862 ! bacitracin A +intersection_of: has_primary_input CHEBI:184381 ! bacitracin A zwitterion created_by: yaf creation_date: 2012-07-11T03:16:20Z @@ -473037,7 +473037,7 @@ synonym: "bacitracin A biosynthesis" EXACT [GOC:TermGenie] synonym: "bacitracin A formation" EXACT [GOC:TermGenie] synonym: "bacitracin A synthesis" EXACT [GOC:TermGenie] intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35862 ! bacitracin A +intersection_of: has_primary_output CHEBI:184381 ! bacitracin A zwitterion created_by: yaf creation_date: 2012-07-11T03:16:27Z @@ -529151,7 +529151,7 @@ name: response to kainic acid namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a kainic acid stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:17443789] intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_input CHEBI:31746 ! kainic acid +intersection_of: has_input CHEBI:156548 ! kainate(1-) created_by: sl creation_date: 2015-06-18T22:42:52Z @@ -529161,7 +529161,7 @@ name: cellular response to kainic acid namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a kainic acid stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:17443789] intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_input CHEBI:31746 ! kainic acid +intersection_of: has_input CHEBI:156548 ! kainate(1-) created_by: sl creation_date: 2015-06-18T22:42:58Z diff --git a/src/ontology/imports/go-pattern-conformance.ttl b/src/ontology/imports/go-pattern-conformance.ttl index 6d9516496a..2222ef5a7b 100644 --- a/src/ontology/imports/go-pattern-conformance.ttl +++ b/src/ontology/imports/go-pattern-conformance.ttl @@ -774,7 +774,7 @@ . # - , . + , . # . @@ -891,7 +891,7 @@ . # - , . + , . # . @@ -3846,6 +3846,9 @@ . # + . +# + . # @@ -4650,7 +4653,7 @@ . # - , . + , . # . @@ -4875,7 +4878,7 @@ . # - , . + , . # , . @@ -7689,7 +7692,7 @@ , . # - , . + , . # . @@ -12195,9 +12198,6 @@ . # - . -# - . # @@ -12234,7 +12234,7 @@ . # - , . + , . # . @@ -13341,7 +13341,7 @@ . # - , . + , . # . @@ -13647,7 +13647,7 @@ , . # - , . + , . # , . @@ -17748,9 +17748,6 @@ . # - . -# - . # @@ -19665,7 +19662,7 @@ . # - , . + , . # . @@ -22056,7 +22053,7 @@ . # - , . + , . # . @@ -22155,7 +22152,7 @@ . # - , . + , . # , . @@ -25563,7 +25560,7 @@ . # - , . + , . # . @@ -25578,7 +25575,7 @@ . # - , . + , . # . @@ -25593,7 +25590,7 @@ . # - , . + , . # . @@ -28566,7 +28563,7 @@ . # - , . + , . # . @@ -30795,7 +30792,7 @@ . # - , . + , . # . @@ -30819,7 +30816,7 @@ . # - , . + , . # . @@ -30828,7 +30825,7 @@ . # - , . + , . # . @@ -30909,7 +30906,7 @@ . # - , . + , . # . @@ -31632,7 +31629,7 @@ . # - , . + , . # . @@ -32019,7 +32016,7 @@ , . # - , . + , . # , . @@ -32577,7 +32574,7 @@ , , . # - , , . + , , . # , , . @@ -32892,7 +32889,7 @@ . # - , . + , . # , . @@ -32901,7 +32898,7 @@ , . # - , . + , . # , . @@ -32910,13 +32907,13 @@ , . # - , . + , . # , . # - , . + , . # , . @@ -32925,10 +32922,10 @@ , . # - , . + , . # - , . + , . # . @@ -33006,7 +33003,7 @@ . # - , . + , . # , . @@ -34158,7 +34155,7 @@ . # - , , . + , , . # . @@ -35712,7 +35709,7 @@ . # - , . + , . # . @@ -35772,7 +35769,7 @@ . # - , . + , . # . @@ -35835,7 +35832,7 @@ . # - , . + , . # . @@ -36543,7 +36540,7 @@ . # - , . + , . # . @@ -36729,24 +36726,15 @@ . # - . -# - . # . # - . -# - . # - . -# - . # @@ -36756,9 +36744,6 @@ . # - . -# - . # @@ -36801,9 +36786,6 @@ . # - . -# - . # @@ -36828,9 +36810,6 @@ . # - . -# - . # @@ -36840,9 +36819,6 @@ . # - . -# - . # @@ -36972,9 +36948,6 @@ . # - , . -# - . # @@ -37365,18 +37338,12 @@ . # - . -# - . # . # - . -# - . # @@ -37446,9 +37413,6 @@ . # - . -# - . # @@ -37545,9 +37509,6 @@ . # - . -# - . # @@ -38427,7 +38388,7 @@ . # - , . + , . # . @@ -39846,7 +39807,7 @@ . # - , . + , . # . @@ -41169,7 +41130,7 @@ . # - , . + , . # , . @@ -41775,7 +41736,7 @@ . # - , . + , . # . @@ -41838,7 +41799,7 @@ . # - , . + , . # . @@ -43635,7 +43596,7 @@ . # - , . + , . # . @@ -44628,7 +44589,7 @@ . # - , . + , . # . @@ -44943,7 +44904,7 @@ . # - , . + , . # . @@ -47910,7 +47871,7 @@ . # - , . + , . # . @@ -48126,7 +48087,7 @@ . # - , . + , . # . @@ -51639,7 +51600,7 @@ . # - , . + , . # . @@ -52851,7 +52812,7 @@ . # - , . + , . # . @@ -52887,7 +52848,7 @@ . # - , . + , . # .