diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index e9d3b46c3..dfd8db054 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -28375,7 +28375,7 @@ def: "The process in which an amino acid is transported across a membrane." [GOC comment: Note that this term is not intended for use in annotating lateral movement within membranes. synonym: "amino acid membrane transport" EXACT [] intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion created_by: dph creation_date: 2009-11-02T02:36:11Z @@ -51126,7 +51126,7 @@ synonym: "cation/amino acid symporter" BROAD [] synonym: "hydrogen:amino acid symporter activity" EXACT [] intersection_of: GO:0015293 ! symporter activity intersection_of: has_primary_input CHEBI:15378 ! hydron -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0005281 @@ -51159,7 +51159,7 @@ synonym: "sodium:amino acid transporter activity" BROAD [] synonym: "threonine/serine:sodium symporter activity" NARROW [] intersection_of: GO:0015293 ! symporter activity intersection_of: has_primary_input CHEBI:29101 ! sodium(1+) -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0005287 @@ -52180,7 +52180,7 @@ synonym: "cation/amino acid symporter activity" EXACT [] synonym: "cation:amino acid symporter activity" EXACT [] intersection_of: GO:0015293 ! symporter activity intersection_of: has_primary_input CHEBI:23906 ! monoatomic cation -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24479" xsd:anyURI [Term] @@ -59351,7 +59351,7 @@ xref: MetaCyc:P121-PWY is_a: GO:0043101 ! purine-containing compound salvage is_a: GO:0043174 ! nucleoside salvage is_a: GO:0046129 ! purine ribonucleoside biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26399 ! purine ribonucleoside [Term] @@ -59375,7 +59375,7 @@ synonym: "adenine salvage pathway" EXACT [] synonym: "adenine, hypoxanthine and their nucleoside salvage" BROAD [] is_a: GO:0043096 ! purine nucleobase salvage is_a: GO:0046084 ! adenine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:16708 ! adenine [Term] @@ -59386,7 +59386,7 @@ def: "Any process that generates adenosine, adenine riboside, from derivatives o synonym: "adenine, hypoxanthine and their nucleoside salvage" BROAD [] is_a: GO:0006166 ! purine ribonucleoside salvage is_a: GO:0046086 ! adenosine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:16335 ! adenosine [Term] @@ -59497,7 +59497,7 @@ def: "Any process that generates guanine, 2-amino-6-hydroxypurine, from derivati synonym: "guanine, xanthine and their nucleoside salvage" BROAD [] is_a: GO:0043096 ! purine nucleobase salvage is_a: GO:0046099 ! guanine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:16235 ! guanine [Term] @@ -59508,7 +59508,7 @@ def: "Any process that generates guanosine, guanine riboside, from derivatives o synonym: "guanine, xanthine and their nucleoside salvage" BROAD [] is_a: GO:0006166 ! purine ribonucleoside salvage is_a: GO:0046114 ! guanosine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:16750 ! guanosine [Term] @@ -59517,7 +59517,7 @@ name: deoxyguanosine salvage namespace: biological_process def: "Any process that generates deoxyguanosine from derivatives of it, without de novo synthesis." [GOC:jl] is_a: GO:0043098 ! purine deoxyribonucleoside salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:17172 ! 2'-deoxyguanosine [Term] @@ -59635,7 +59635,7 @@ synonym: "adenine, hypoxanthine and their nucleoside salvage" RELATED [] synonym: "guanine, xanthine and their nucleoside salvage" RELATED [] is_a: GO:0006166 ! purine ribonucleoside salvage is_a: GO:0046103 ! inosine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:17596 ! inosine [Term] @@ -59645,7 +59645,7 @@ namespace: biological_process def: "Any process that generates deoxyinosine from derivatives of it, without de novo synthesis." [GOC:jl] is_a: GO:0043098 ! purine deoxyribonucleoside salvage is_a: GO:0046095 ! deoxyinosine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:28997 ! 2'-deoxyinosine [Term] @@ -60000,7 +60000,7 @@ namespace: biological_process def: "Any process that generates uracil, 2,4-dioxopyrimidine, from derivatives of it without de novo synthesis." [GOC:jl] is_a: GO:0043100 ! pyrimidine nucleobase salvage is_a: GO:0046107 ! uracil biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:17568 ! uracil [Term] @@ -60152,7 +60152,7 @@ namespace: biological_process def: "Any process that generates cytidine, cytosine riboside, from derivatives of it without de novo synthesis." [GOC:jl] is_a: GO:0043097 ! pyrimidine nucleoside salvage is_a: GO:0046088 ! cytidine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:17562 ! cytidine [Term] @@ -60162,7 +60162,7 @@ namespace: biological_process def: "Any process that generates deoxycytidine, 2-deoxyribosylcytosine, from derivatives of it, without de novo synthesis." [GOC:jl] is_a: GO:0043099 ! pyrimidine deoxyribonucleoside salvage is_a: GO:0046093 ! deoxycytidine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:15698 ! 2'-deoxycytidine [Term] @@ -60173,7 +60173,7 @@ def: "Any process that generates CMP, cytidine monophosphate, from derivatives o synonym: "cytidine monophosphate salvage" EXACT [] is_a: GO:0009224 ! CMP biosynthetic process is_a: GO:0010138 ! pyrimidine ribonucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:60377 ! cytidine 5'-monophosphate(2-) [Term] @@ -60184,7 +60184,7 @@ def: "Any process that generates dCMP, deoxycytidine monophosphate from derivati synonym: "deoxycytidine monophosphate salvage" EXACT [] is_a: GO:0010139 ! pyrimidine deoxyribonucleotide salvage is_a: GO:0046064 ! dCMP biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:57566 ! 2'-deoxycytosine 5'-monophosphate(2-) [Term] @@ -62937,7 +62937,7 @@ synonym: "cellular amino acid metabolic process" EXACT [] synonym: "cellular amino acid metabolism" EXACT [] is_a: GO:0044238 ! primary metabolic process intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input_or_output CHEBI:35238 ! amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17904" xsd:anyURI [Term] @@ -63637,7 +63637,7 @@ synonym: "cellular modified amino acid metabolic process" EXACT [GOC:mah] synonym: "cellular modified amino acid metabolism" EXACT [GOC:mah] synonym: "modified amino acid metabolism" EXACT [GOC:mah] intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:83821 ! amino acid derivative +intersection_of: has_primary_input_or_output CHEBI:83821 ! amino-acid derivative property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] @@ -66795,7 +66795,7 @@ def: "The directed movement of amino acids, organic acids containing one or more subset: goslim_pir subset: goslim_yeast intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0006867 @@ -81309,7 +81309,7 @@ synonym: "amino acid synthesis" EXACT [] synonym: "cellular amino acid biosynthetic process" EXACT [] xref: Wikipedia:Amino_acid_synthesis intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_output CHEBI:35238 ! amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17904" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27304" xsd:anyURI @@ -81347,7 +81347,7 @@ def: "Any process that generates a pyrimidine-containing compound, a nucleobase, subset: goslim_pir synonym: "pyrimidine salvage" RELATED [] is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:39447 ! pyrimidines [Term] @@ -87148,7 +87148,7 @@ synonym: "amino acid catabolism" EXACT [] synonym: "amino acid degradation" EXACT [] synonym: "cellular amino acid catabolic process" EXACT [] intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/17904" xsd:anyURI [Term] @@ -91260,7 +91260,7 @@ def: "Any process that generates pyridoxal 5'-phosphate, the active form of vita synonym: "pyridoxal 5' phosphate salvage" EXACT [] xref: MetaCyc:PLPSAL-PWY is_a: GO:0042823 ! pyridoxal phosphate biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:597326 ! pyridoxal 5'-phosphate(2-) [Term] @@ -95293,14 +95293,14 @@ def: "A light-dependent catabolic process occurring concomitantly with photosynt synonym: "photorespiratory pathway" EXACT [GOC:cjm] xref: MetaCyc:PWY-181 xref: Wikipedia:Photorespiration -is_a: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage [Term] id: GO:0009854 name: oxidative photosynthetic carbon pathway namespace: biological_process def: "The reactions of the C2 pathway bring about the metabolic conversion of two molecules of 2-phosphoglycolate to one molecule of 3-phosphoglycerate, which can be used by the C3 cycle, and one molecule of carbon dioxide (CO2)." [ISBN:0943088399] -is_a: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage relationship: part_of GO:0009853 ! photorespiration [Term] @@ -98214,7 +98214,7 @@ namespace: biological_process def: "The pathway by which pyrimidine bases or pyrimidine ribonucleosides from pyrimidine nucleotide breakdown are converted back to pyrimidine ribonucleotides. The salvage pathway is important where there is no de novo pyrimidine nucleotide biosynthesis." [GOC:pz] is_a: GO:0009220 ! pyrimidine ribonucleotide biosynthetic process is_a: GO:0032262 ! pyrimidine nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26446 ! pyrimidine ribonucleotide [Term] @@ -98225,7 +98225,7 @@ def: "The pathway by which pyrimidine bases or pyrimidine deoxyribonucleotides f xref: MetaCyc:PWY-7199 is_a: GO:0009221 ! pyrimidine deoxyribonucleotide biosynthetic process is_a: GO:0032262 ! pyrimidine nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26436 ! pyrimidine 2'-deoxyribonucleotide [Term] @@ -110304,7 +110304,7 @@ synonym: "amino acid/choline transmembrane transporter activity" NARROW [] synonym: "general amino acid permease activity" RELATED [] synonym: "hydroxy/aromatic amino acid permease activity" RELATED [] intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion relationship: part_of GO:0003333 {source="GO_REF:0000090"} ! amino acid transmembrane transport [Term] @@ -112734,7 +112734,7 @@ synonym: "amino acid-transporting ATPase activity" EXACT [] synonym: "ATP-dependent amino acid transmembrane transporter activity" EXACT [] synonym: "ATPase-coupled amino acid transmembrane transporter activity" RELATED [] intersection_of: GO:0140359 ! ABC-type transporter activity -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion relationship: part_of GO:0003333 ! amino acid transmembrane transport [Term] @@ -115664,7 +115664,7 @@ namespace: biological_process def: "The process in which tartrate is transported across a lipid bilayer, from one side of a membrane to the other." [GOC:krc] synonym: "tartrate transport" RELATED [] intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:35397 ! tartrate(1-) +intersection_of: has_primary_input CHEBI:35397 ! DL-tartrate(1-) [Term] id: GO:0015746 @@ -123282,7 +123282,7 @@ def: "Binding to an amino acid, organic acids containing one or more amino subst subset: goslim_metagenomics subset: goslim_pir intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0016598 @@ -127361,7 +127361,7 @@ def: "Enables the transfer of a solute or solutes from one side of a membrane to synonym: "potassium:amino acid symporter activity" EXACT [] intersection_of: GO:0015293 ! symporter activity intersection_of: has_primary_input CHEBI:29103 ! potassium(1+) -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0017038 @@ -142860,7 +142860,7 @@ xref: MetaCyc:PWY3O-4107 {source="skos:narrowMatch"} xref: MetaCyc:PYRIDNUCSAL-PWY {source="skos:narrowMatch"} is_a: GO:0019357 ! nicotinate nucleotide biosynthetic process is_a: GO:0019365 ! pyridine nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:25534 ! nicotinic acid nucleotide property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI @@ -142942,7 +142942,7 @@ def: "Any process that generates a pyridine nucleotide, a nucleotide characteriz synonym: "pyridine nucleotide cycling" EXACT [] is_a: GO:0019363 ! pyridine nucleotide biosynthetic process is_a: GO:0043173 ! nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:36980 ! pyridine nucleotide [Term] @@ -144357,7 +144357,7 @@ def: "Any process which produces the amino acid proline from derivatives of it, synonym: "proline cycling" EXACT [] is_a: GO:0006561 ! proline biosynthetic process is_a: GO:0043102 ! amino acid salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:32871 ! prolinate [Term] @@ -180271,7 +180271,7 @@ def: "Any process which produces a purine nucleotide from derivatives of it, wit is_a: GO:0006164 ! purine nucleotide biosynthetic process is_a: GO:0043101 ! purine-containing compound salvage is_a: GO:0043173 ! nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26395 ! purine nucleotide [Term] @@ -180282,7 +180282,7 @@ def: "Any process which produces a pyrimidine nucleotide from derivatives of it, is_a: GO:0006221 ! pyrimidine nucleotide biosynthetic process is_a: GO:0008655 ! pyrimidine-containing compound salvage is_a: GO:0043173 ! nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26441 ! pyrimidine nucleotide [Term] @@ -180292,7 +180292,7 @@ namespace: biological_process def: "Any process which produces guanosine monophosphate from derivatives of it, without de novo synthesis." [GOC:mah] is_a: GO:0006177 ! GMP biosynthetic process is_a: GO:0032261 ! purine nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:58115 ! guanosine 5'-monophosphate(2-) [Term] @@ -180302,7 +180302,7 @@ namespace: biological_process def: "Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis." [GOC:mah] is_a: GO:0006188 ! IMP biosynthetic process is_a: GO:0032261 ! purine nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:58053 ! IMP(2-) [Term] @@ -180312,7 +180312,7 @@ namespace: biological_process def: "Any process which produces xanthosine monophosphate from derivatives of it, without de novo synthesis." [GOC:mah] is_a: GO:0032261 ! purine nucleotide salvage is_a: GO:0097293 ! XMP biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:57464 ! 5'-xanthylate(2-) [Term] @@ -188361,7 +188361,7 @@ synonym: "amino acid efflux" EXACT [] synonym: "amino acid export" BROAD [] synonym: "amino acid transmembrane export" BROAD [] intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005576 ! extracellular region intersection_of: has_target_start_location GO:0005829 ! cytosol intersection_of: results_in_transport_across GO:0005886 ! plasma membrane @@ -188376,7 +188376,7 @@ def: "The directed movement of amino acids out of the vacuole, across the vacuol synonym: "amino acid efflux from vacuole" EXACT [] synonym: "vacuolar amino acid export" EXACT [] intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005829 ! cytosol intersection_of: has_target_start_location GO:0005775 ! vacuolar lumen @@ -188387,7 +188387,7 @@ namespace: biological_process def: "The directed movement of amino acids into the vacuole across the vacuolar membrane." [GOC:mah] synonym: "vacuolar amino acid import" EXACT [] intersection_of: GO:0055085 ! transmembrane transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen intersection_of: has_target_start_location GO:0005829 ! cytosol @@ -191711,7 +191711,7 @@ def: "A process that generates phytol, (2E,7R,11R)-3,7,11,15-tetramethylhexadec- synonym: "phytol salvage pathway" EXACT [] xref: MetaCyc:PWY-5107 is_a: GO:0033520 ! phytol biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:17327 ! phytol [Term] @@ -193795,7 +193795,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate." [GOC:mah] synonym: "ferulate metabolism" EXACT [] intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:29749 ! ferulate +intersection_of: has_primary_input_or_output CHEBI:29749 ! trans-ferulate [Term] id: GO:0033495 @@ -193808,7 +193808,7 @@ synonym: "ferulate formation" EXACT [] synonym: "ferulate synthesis" EXACT [] xref: MetaCyc:PWY-5168 {source="skos:broadMatch"} intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:29749 ! ferulate +intersection_of: has_primary_output CHEBI:29749 ! trans-ferulate property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28388" xsd:anyURI [Term] @@ -203673,7 +203673,7 @@ namespace: biological_process def: "Any process that generates nicotinamide adenine dinucleotide (NAD) from derivatives of it, without de novo synthesis; salvage is usually from the degradation products nicotinic acid (Na) and nicotinamide (Nam)." [GOC:mah, PMID:12648681, PMID:27374990] synonym: "NAD salvage pathway" EXACT [] is_a: GO:0009435 ! NAD biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:13389 ! NAD property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/21577" xsd:anyURI @@ -205042,7 +205042,7 @@ def: "The process in which an amino acid is transported from one side of the vac comment: Note that this term is not intended for use in annotating lateral movement within membranes. synonym: "vacuolar amino acid membrane transport" EXACT [] intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: results_in_transport_across GO:0005774 ! vacuolar membrane [Term] @@ -205061,7 +205061,7 @@ name: neutral amino acid transmembrane export from vacuole namespace: biological_process def: "The directed movement of neutral amino acids out of the vacuole, across the vacuolar membrane." [GOC:mah] intersection_of: GO:0015804 ! neutral amino acid transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005829 ! cytosol intersection_of: has_target_start_location GO:0005775 ! vacuolar lumen intersection_of: results_in_transport_across GO:0016020 ! membrane @@ -205072,7 +205072,7 @@ name: basic amino acid transmembrane import into vacuole namespace: biological_process def: "The directed movement of basic amino acids into the vacuole across the vacuolar membrane." [GOC:mah] intersection_of: GO:0015802 ! basic amino acid transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen intersection_of: has_target_start_location GO:0005829 ! cytosol intersection_of: results_in_transport_across GO:0016020 ! membrane @@ -205083,7 +205083,7 @@ name: neutral amino acid transmembrane import into vacuole namespace: biological_process def: "The directed movement of neutral amino acids into the vacuole across the vacuolar membrane." [GOC:mah] intersection_of: GO:0015804 ! neutral amino acid transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005775 ! vacuolar lumen intersection_of: has_target_start_location GO:0005829 ! cytosol intersection_of: results_in_transport_across GO:0016020 ! membrane @@ -222941,7 +222941,7 @@ xref: MetaCyc:PWY-7357 {source="skos:narrowMatch"} xref: MetaCyc:PWY-8457 {source="skos:narrowMatch"} is_a: GO:0008655 ! pyrimidine-containing compound salvage is_a: GO:0009228 ! thiamine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:18385 ! thiamine(1+) property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28527" xsd:anyURI created_by: bf @@ -223256,7 +223256,7 @@ synonym: "deoxythymidine monophosphate biosynthesis via salvage pathway" RELATED synonym: "dTMP biosynthesis via salvage pathway" RELATED [GOC:yaf, PMID:5387459] is_a: GO:0006231 ! dTMP biosynthetic process is_a: GO:0010139 ! pyrimidine deoxyribonucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:63528 ! dTMP(2-) created_by: bf creation_date: 2012-04-20T10:33:28Z @@ -235325,7 +235325,7 @@ synonym: "cellular modified amino acid catabolism" EXACT [GOC:mah] synonym: "cellular modified amino acid degradation" EXACT [GOC:mah] synonym: "modified amino acid catabolism" EXACT [GOC:mah] intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: has_primary_input CHEBI:83821 ! amino-acid derivative property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] @@ -236437,7 +236437,7 @@ synonym: "GDP-L-fucose biosynthetic process, salvage pathway" EXACT [] xref: MetaCyc:PWY-6 is_a: GO:0042350 ! GDP-L-fucose biosynthetic process is_a: GO:0043173 ! nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:57984 ! GDP-L-fucose(2-) [Term] @@ -236991,7 +236991,7 @@ synonym: "cellular modified amino acid biosynthesis" EXACT [GOC:mah] synonym: "cellular modified amino acid formation" EXACT [GOC:mah] synonym: "cellular modified amino acid synthesis" EXACT [GOC:mah] intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:83821 ! amino acid derivative +intersection_of: has_primary_output CHEBI:83821 ! amino-acid derivative property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28908" xsd:anyURI [Term] @@ -243787,7 +243787,7 @@ namespace: biological_process def: "The directed movement of amino acids into a cell or organelle." [GOC:jl] synonym: "amino acid uptake" EXACT [] is_a: GO:0006810 ! transport -relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion +relationship: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0043093 @@ -243805,7 +243805,7 @@ relationship: part_of GO:0019954 ! asexual reproduction [Term] id: GO:0043094 -name: cellular metabolic compound salvage +name: metabolic compound salvage namespace: biological_process def: "Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells." [GOC:mlg] subset: goslim_pir @@ -243828,7 +243828,7 @@ def: "Any process that generates purine nucleobases, one of the two classes of n synonym: "purine base salvage" EXACT [GOC:go_curators] is_a: GO:0009113 ! purine nucleobase biosynthetic process is_a: GO:0043101 ! purine-containing compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26386 ! purine nucleobase [Term] @@ -243839,7 +243839,7 @@ def: "Any process that generates a pyrimidine nucleoside, one of a family of org is_a: GO:0008655 ! pyrimidine-containing compound salvage is_a: GO:0043174 ! nucleoside salvage is_a: GO:0046134 ! pyrimidine nucleoside biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26440 ! pyrimidine nucleoside [Term] @@ -243850,7 +243850,7 @@ def: "Any process which produces a purine deoxyribonucleoside from derivatives o is_a: GO:0043101 ! purine-containing compound salvage is_a: GO:0043174 ! nucleoside salvage is_a: GO:0046123 ! purine deoxyribonucleoside biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:60173 ! purine deoxyribonucleoside [Term] @@ -243860,7 +243860,7 @@ namespace: biological_process def: "Any process that generates a pyrimidine deoxyribonucleoside from derivatives of it, without de novo synthesis." [GOC:jl] is_a: GO:0043097 ! pyrimidine nucleoside salvage is_a: GO:0046126 ! pyrimidine deoxyribonucleoside biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:19255 ! pyrimidine 2'-deoxyribonucleoside [Term] @@ -243870,7 +243870,7 @@ namespace: biological_process def: "Any process that generates pyrimidine nucleobases, 1,3-diazine organic nitrogenous bases, from derivatives of them without de novo synthesis." [GOC:jl] synonym: "pyrimidine base salvage" EXACT [GOC:go_curators] is_a: GO:0008655 ! pyrimidine-containing compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26432 ! pyrimidine nucleobase [Term] @@ -243881,7 +243881,7 @@ def: "Any process that generates a purine-containing compound, any nucleobase, n subset: goslim_pir synonym: "purine salvage" RELATED [] is_a: GO:0072522 ! purine-containing compound biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26401 ! purines [Term] @@ -243890,8 +243890,8 @@ name: amino acid salvage namespace: biological_process def: "Any process which produces an amino acid from derivatives of it, without de novo synthesis." [GOC:jl] is_a: GO:0008652 ! amino acid biosynthetic process -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:37022 ! amino-acid anion [Term] @@ -243903,7 +243903,7 @@ synonym: "adenine, hypoxanthine and their nucleoside salvage" NARROW [] synonym: "guanine, xanthine and their nucleoside salvage" NARROW [] is_a: GO:0043096 ! purine nucleobase salvage is_a: GO:0046101 ! hypoxanthine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:17368 ! hypoxanthine [Term] @@ -244598,8 +244598,8 @@ namespace: biological_process def: "Any process which produces a nucleotide, a compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety, from derivatives of it without de novo synthesis." [GOC:jl] xref: Wikipedia:Nucleotide_salvage is_a: GO:0009165 ! nucleotide biosynthetic process -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:36976 ! nucleotide [Term] @@ -244608,8 +244608,8 @@ name: nucleoside salvage namespace: biological_process def: "Any process which produces a nucleotide, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide), from derivatives of it without de novo synthesis." [GOC:jl] is_a: GO:0009163 ! nucleoside biosynthetic process -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:33838 ! nucleoside [Term] @@ -244859,7 +244859,7 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to amino acid stimulus" EXACT [GOC:dos] is_a: GO:0001101 ! response to acid chemical intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion [Term] id: GO:0043201 @@ -255511,7 +255511,7 @@ synonym: "UMP biosynthesis via nucleoside salvage pathway" EXACT [] synonym: "UMP biosynthetic process via nucleoside salvage pathway" EXACT [] is_a: GO:0006222 ! UMP biosynthetic process is_a: GO:0010138 ! pyrimidine ribonucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:57865 ! uridine 5'-monophosphate(2-) created_by: jl creation_date: 2009-10-21T11:32:33Z @@ -255546,7 +255546,7 @@ synonym: "adenosine monophosphate salvage" EXACT [] synonym: "AMP biosynthetic process via salvage pathway" EXACT [] is_a: GO:0006167 ! AMP biosynthetic process is_a: GO:0032261 ! purine nucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:456215 ! adenosine 5'-monophosphate(2-) created_by: jl creation_date: 2009-10-22T02:52:11Z @@ -255570,7 +255570,7 @@ synonym: "CTP biosynthetic process via salvage pathway" EXACT [] synonym: "cytidine 5'-triphosphate salvage" EXACT [] is_a: GO:0006241 ! CTP biosynthetic process is_a: GO:0010138 ! pyrimidine ribonucleotide salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:37563 ! CTP(4-) created_by: jl creation_date: 2009-10-22T03:24:04Z @@ -330575,7 +330575,7 @@ synonym: "amino acid neurotransmitter recycling" BROAD [] synonym: "amino acid uptake during transmission of nerve impulse" RELATED [GOC:dph, GOC:tb] is_a: GO:0001504 ! neurotransmitter uptake intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_primary_input GOCHE:25512 ! substance with neurotransmitter role intersection_of: has_target_end_location GO:0099523 ! presynaptic cytosol intersection_of: has_target_start_location GO:0005576 ! extracellular region @@ -379488,7 +379488,7 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups." [GOC:mah] synonym: "cellular response to amino acid" EXACT [GOC:mah] intersection_of: GO:0070887 ! cellular response to chemical stimulus -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion created_by: mah creation_date: 2009-12-03T02:08:11Z @@ -379910,7 +379910,7 @@ namespace: biological_process def: "Any process that generates L-methionine from derivatives of it, without de novo synthesis." [GOC:ecd] is_a: GO:0043102 ! amino acid salvage is_a: GO:0071265 ! L-methionine biosynthetic process -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:57844 ! L-methionine zwitterion created_by: mah creation_date: 2009-12-09T04:36:49Z @@ -392292,7 +392292,7 @@ def: "The directed movement of modified amino acids into, out of or within a cel subset: gocheck_do_not_annotate synonym: "amino acid derivative transport" EXACT [] intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: has_primary_input CHEBI:83821 ! amino-acid derivative created_by: mah creation_date: 2010-11-04T12:18:23Z @@ -392347,7 +392347,7 @@ def: "Binding to a modified amino acid." [GOC:mah] synonym: "amino acid derivative binding" EXACT [] is_a: GO:0005488 ! binding intersection_of: GO:0005488 ! binding -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: has_primary_input CHEBI:83821 ! amino-acid derivative created_by: mah creation_date: 2010-11-04T05:45:32Z @@ -392432,7 +392432,7 @@ def: "Enables the transfer of modified amino acids from one side of a membrane t synonym: "amino acid derivative transmembrane transporter activity" EXACT [] synonym: "modified amino acid transporter activity" BROAD [GOC:mah] intersection_of: GO:0022857 ! transmembrane transporter activity -intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative +intersection_of: has_primary_input CHEBI:83821 ! amino-acid derivative relationship: part_of GO:0072337 ! modified amino acid transport created_by: mah creation_date: 2010-11-11T11:50:31Z @@ -401169,7 +401169,7 @@ def: "A homeostatic process involved in the maintenance of a steady state level synonym: "amino acid homeostasis" BROAD [] synonym: "cellular amino acid homeostasis" EXACT [] intersection_of: GO:0055082 ! intracellular chemical homeostasis -intersection_of: regulates_levels_of CHEBI:35238 ! amino acid zwitterion +intersection_of: regulates_levels_of CHEBI:35238 ! amino-acid zwitterion created_by: dhl creation_date: 2010-01-27T04:47:27Z @@ -403564,7 +403564,7 @@ synonym: "amino acid transmembrane import" BROAD [] synonym: "L-amino acid import" BROAD [] synonym: "L-amino acid uptake" NARROW [] intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion intersection_of: has_target_end_location GO:0005829 ! cytosol intersection_of: has_target_start_location GO:0005576 ! extracellular region intersection_of: results_in_transport_across GO:0005886 ! plasma membrane @@ -443434,8 +443434,8 @@ id: GO:0106380 name: purine ribonucleotide salvage namespace: biological_process def: "Any process which produces a purine ribonucleotide from derivatives of it, without de novo synthesis." [PMID:8864750] -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26400 ! purine ribonucleotide created_by: hjd creation_date: 2021-06-11T14:06:34Z @@ -443445,8 +443445,8 @@ id: GO:0106381 name: purine deoxyribonucleotide salvage namespace: biological_process def: "Any process which produces a purine deoxyribonucleotide from derivatives of it, without de novo synthesis." [PMID:6605343] -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:26390 ! purine 2'-deoxyribonucleotide created_by: hjd creation_date: 2021-06-11T14:55:33Z @@ -443456,8 +443456,8 @@ id: GO:0106383 name: dAMP salvage namespace: biological_process def: "Any process which produces a dAMP from derivatives of it, without de novo synthesis." [PMID:21829339, PMID:6605343] -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:58245 ! 2'-deoxyadenosine 5'-monophosphate(2-) created_by: hjd creation_date: 2021-06-11T16:51:09Z @@ -443467,8 +443467,8 @@ id: GO:0106384 name: dGMP salvage namespace: biological_process def: "Any process which produces a dGMP from derivatives of it, without de novo synthesis." [PMID:21829339, PMID:6605343] -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:57673 ! 2'-deoxyguanosine 5'-monophosphate(2-) created_by: hjd creation_date: 2021-06-11T19:36:06Z @@ -443478,8 +443478,8 @@ id: GO:0106385 name: dIMP salvage namespace: biological_process def: "Any process which produces a dIMP from derivatives of it, without de novo synthesis." [PMID:8692979] -is_a: GO:0043094 ! cellular metabolic compound salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +is_a: GO:0043094 ! metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:61194 ! 2'-deoxyinosine 5'-phosphate(2-) created_by: hjd creation_date: 2021-06-11T20:03:19Z @@ -458262,7 +458262,7 @@ namespace: molecular_function def: "Binding to and responding, e.g. by conformational change, to changes in the cellular level of an amino acid." [GOC:pg] synonym: "amino acid sensing activity" EXACT [] intersection_of: GO:0140299 ! molecular sensor activity -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/23126" xsd:anyURI created_by: pg creation_date: 2022-04-01T08:44:02Z @@ -459105,7 +459105,7 @@ namespace: molecular_function def: "Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + monoatomic cation(in) = solute(in) + monoatomic cation(out). Monoatomic cations include H+, Mg2+, Ca2+, etc." [GOC:curators] intersection_of: GO:0015297 ! antiporter activity intersection_of: has_primary_input CHEBI:23906 ! monoatomic cation -intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion +intersection_of: has_primary_input CHEBI:35238 ! amino-acid zwitterion property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/24479" xsd:anyURI created_by: pg creation_date: 2022-05-30T13:15:04Z @@ -488652,7 +488652,7 @@ synonym: "ferulate breakdown" EXACT [GOC:TermGenie] synonym: "ferulate catabolism" EXACT [GOC:TermGenie] synonym: "ferulate degradation" EXACT [GOC:TermGenie] intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:29749 ! ferulate +intersection_of: has_primary_input CHEBI:29749 ! trans-ferulate created_by: tt creation_date: 2012-06-29T08:06:37Z @@ -497545,7 +497545,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving an alpha-amino acid." [GOC:TermGenie] synonym: "alpha-amino acid metabolism" EXACT [GOC:TermGenie] intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:78608 ! alpha-amino acid zwitterion +intersection_of: has_primary_input_or_output CHEBI:78608 ! alpha-amino-acid zwitterion created_by: tb creation_date: 2012-11-08T17:39:50Z @@ -497558,7 +497558,7 @@ synonym: "alpha-amino acid breakdown" EXACT [GOC:TermGenie] synonym: "alpha-amino acid catabolism" EXACT [GOC:TermGenie] synonym: "alpha-amino acid degradation" EXACT [GOC:TermGenie] intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:78608 ! alpha-amino acid zwitterion +intersection_of: has_primary_input CHEBI:78608 ! alpha-amino-acid zwitterion created_by: tb creation_date: 2012-11-08T17:39:54Z @@ -497572,7 +497572,7 @@ synonym: "alpha-amino acid biosynthesis" EXACT [GOC:TermGenie] synonym: "alpha-amino acid formation" EXACT [GOC:TermGenie] synonym: "alpha-amino acid synthesis" EXACT [GOC:TermGenie] intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:78608 ! alpha-amino acid zwitterion +intersection_of: has_primary_output CHEBI:78608 ! alpha-amino-acid zwitterion created_by: tb creation_date: 2012-11-08T17:39:58Z @@ -579441,7 +579441,7 @@ namespace: biological_process def: "Any process which produces queuosine from derivatives of it, without de novo synthesis." [GOC:vw, PMID:24911101] is_a: GO:0008616 ! queuosine biosynthetic process is_a: GO:0043174 ! nucleoside salvage -intersection_of: GO:0043094 ! cellular metabolic compound salvage +intersection_of: GO:0043094 ! metabolic compound salvage intersection_of: has_primary_output CHEBI:60193 ! queuosine created_by: pr creation_date: 2014-06-10T14:56:12Z