Linear Regression and Logistic Regression

[prasunanand]

Linear Regression has been implemented on single core.

Exact same output upto 6 decimal places :D .
To test

./build/faster_lmm_d --geno=data/gemma/BXD_geno.txt.gz --pheno=data/gemma/BXD.pheno --covar=data/gemma/BXD_covariates2.txt --anno=data/gemma/BXD_snps.txt --kinship=data/gemma/BXD.cXX.txt --lm=4 --maf=0.1 --cmd=lm

Logistic Regression needs to be implemented. I have ported the code.
@pjotrp : Currently, GEMMA uses code in logistic.cpp for BSLMM-DAP.

I think logistic regression as a GWAS test has not been implemented into GEMMA.
What should I do?

[prasunanand]

Linear Models implemented on multi-core as well as GPUs .
prasunanand@6f92135

GPUs and Multicore are faster. Will report timings soon.

[prasunanand]

Logistic Regression has been implemented 😄

prasunanand@379db67

Plugging in GEMMA IO is in progress.

[robwwilliams]

Great work Prasun. Enjoyed talking yesterday.

On Tue, Jul 17, 2018 at 3:13 PM Prasun Anand ***@***.***> wrote: Logistic Regression has been implemented 😄 ***@***.*** <prasunanand@379db67> Plugging in GEMMA IO is in progress. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#36 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ALva_NQq17pZQ8AWFwaJfAH4a6SJS78cks5uHkVugaJpZM4Upypf> .

-- Rob Robert W. Williams, Ph.D. Chair: Department of Genetics, Genomics and Informatics 71 S Manassas St, Memphis TN 38163 University of Tennessee Health Science Center Office 901 448-7050 CELL 901 604 4752 Office: Translational Science Research Building, Room 407 EMAIL: [email protected] Alternative email: [email protected] SKYPE: robwwilliams

[prasunanand]

Thanks @robwwilliams :) . I too enjoyed the meeting.