From deba1cbec7679351b4a828783b84938ac7882abd Mon Sep 17 00:00:00 2001 From: integrated_methane_inversion Continuous Integration Date: Wed, 13 Nov 2024 19:45:13 +0000 Subject: [PATCH] Continuous Integration Manifest Generation --- src/components/shell_variable_manifest.md | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/src/components/shell_variable_manifest.md b/src/components/shell_variable_manifest.md index ac6562a3..73dada47 100644 --- a/src/components/shell_variable_manifest.md +++ b/src/components/shell_variable_manifest.md @@ -26,10 +26,10 @@ Note: This does not include variables defined in python scripts. | channels | ['envs/Harvard-Cannon/imi_env.yml'] | ['envs/Harvard-Cannon/imi_env.yml'] | [] | [] | | ClusteringMethod | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | cmd | ['src/components/template_component/template.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh'] | ['src/components/template_component/template.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh'] | ['setup_template', 'run_hemco_prior_emis'] | ['setup_template', 'run_hemco_prior_emis', 'run_hemco_sa', 'exclude_soil_sink'] | -| CondaEnv | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | condaEnv | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | [] | [] | -| CondaFile | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| CondaEnv | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | condaFile | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | [] | [] | +| CondaFile | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | | config_path | ['src/components/preview_component/preview.sh'] | ['src/components/preview_component/preview.sh'] | ['run_preview'] | ['run_preview'] | | ConfigFile | ['run_imi.sh', 'src/components/inversion_component/inversion.sh', 'src/components/preview_component/preview.sh', 'src/utilities/cleanup_script.sh'] | ['run_imi.sh', 'src/utilities/cleanup_script.sh'] | [] | ['setup_inversion', 'run_preview'] | | configFile | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | @@ -73,8 +73,8 @@ Note: This does not include variables defined in python scripts. | ErrorBCs | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | ErrorOH | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | FetchTROPOMI | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | -| file | ['src/components/hemco_prior_emis_component/hemco_prior_emis.sh', 'src/utilities/find_corrupt_files.sh', 'src/utilities/common.sh', 'src/utilities/crop_met.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/utilities/common.sh', 'src/inversion_scripts/run_inversion.sh'] | ['imi_failed', 'send_error'] | ['run_hemco_sa', 'print_stats', 'imi_failed', 'ncmax', 'ncmin', 'calculate_geoschem_domain', 'send_error'] | | FILE | ['src/geoschem_run_scripts/run_bkgd_simulation.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/geoschem_run_scripts/run_jacobian_simulations.sh'] | ['src/geoschem_run_scripts/run_bkgd_simulation.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | +| file | ['src/components/hemco_prior_emis_component/hemco_prior_emis.sh', 'src/utilities/find_corrupt_files.sh', 'src/utilities/common.sh', 'src/utilities/crop_met.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/utilities/common.sh', 'src/inversion_scripts/run_inversion.sh'] | ['imi_failed', 'send_error'] | ['run_hemco_sa', 'print_stats', 'imi_failed', 'ncmax', 'ncmin', 'calculate_geoschem_domain', 'send_error'] | | FILE_LIST | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | filename | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_period'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix'] | | FirstPeriod | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix'] | @@ -93,8 +93,8 @@ Note: This does not include variables defined in python scripts. | GCVizDir | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | GEOSCHEM_VERSION | ['run_imi.sh', 'src/components/setup_component/setup.sh'] | ['run_imi.sh'] | [] | ['setup_imi'] | | geosChemDataPath | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | -| geosChemEnv | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | GEOSChemEnv | ['run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | ['envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | [] | +| geosChemEnv | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | GlobalDir | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | GOSAT | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['activate_observations'] | | gridded_posterior_filename | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['setup_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | @@ -153,7 +153,7 @@ Note: This does not include variables defined in python scripts. | jacobian_sf | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | | jacobian_start | ['src/components/jacobian_component/jacobian.sh', 'src/utilities/common.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number', 'print_stats'] | | JacobianDir | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| JacobianRunsDir | ['src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_kf'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix', 'run_jacobian', 'send_error'] | +| JacobianRunsDir | ['src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_kf', 'run_jacobian'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix', 'setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number', 'send_error'] | | KalmanMode | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['reduce_dimension', 'run_posterior', 'setup_inversion', 'run_inversion', 'run_notebooks', 'create_simulation_dir', 'run_jacobian', 'setup_imi', 'setup_template'] | | kf_period | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | LandCoverFile | ['src/components/statevector_component/statevector.sh'] | ['src/components/statevector_component/statevector.sh'] | ['create_statevector'] | ['create_statevector', 'reduce_dimension'] | @@ -175,8 +175,8 @@ Note: This does not include variables defined in python scripts. | Lons | ['src/components/template_component/template.sh'] | ['src/components/template_component/template.sh'] | ['setup_template'] | ['setup_template'] | | MakePeriodsCSV | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh', 'src/components/setup_component/setup.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf', 'setup_imi'] | | MaxSimultaneousRuns | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian'] | -| Met | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template', 'run_hemco_prior_emis'] | | MET | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | +| Met | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['create_statevector', 'setup_imi', 'setup_template', 'run_hemco_prior_emis'] | | metDir | ['src/components/statevector_component/statevector.sh', 'src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'setup_imi', 'activate_observations'] | | metNum | ['src/components/template_component/template.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh'] | ['src/components/template_component/template.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh'] | ['setup_template', 'run_hemco_prior_emis'] | ['setup_template', 'run_hemco_prior_emis', 'run_hemco_sa', 'exclude_soil_sink'] | | MM | ['src/components/template_component/template.sh'] | [] | [] | ['setup_template'] | @@ -233,7 +233,7 @@ Note: This does not include variables defined in python scripts. | PosteriorName | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['setup_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | PosteriorRunDir | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_kf', 'run_posterior'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | | posteriorSF | ['src/inversion_scripts/run_inversion.sh'] | ['src/inversion_scripts/run_inversion.sh'] | [] | ['send_error'] | -| PrecomputedJacobian | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['run_jacobian'] | +| PrecomputedJacobian | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/jacobian_component/jacobian.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_jacobian', 'run_jacobian'] | | precomputedJacobianCache | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number'] | | precomputedJacobianCachePrefix | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['run_jacobian'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number'] | | PrevDir | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['src/components/posterior_component/posterior.sh', 'src/inversion_scripts/run_inversion.sh'] | ['run_posterior'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'send_error'] | @@ -277,8 +277,8 @@ Note: This does not include variables defined in python scripts. | ROOT | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/template_component/template.sh'] | [] | [] | ['run_posterior', 'create_simulation_dir', 'setup_template'] | | run_dirs_pth | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['get_last_rundir_suffix'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix'] | | runDir | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/components/spinup_component/spinup.sh', 'src/components/preview_component/preview.sh', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/spinup_component/spinup.sh', 'src/components/preview_component/preview.sh', 'src/write_BCs/run_boundary_conditions.sh'] | ['setup_posterior', 'create_simulation_dir', 'setup_imi', 'setup_spinup', 'run_preview'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number', 'setup_imi', 'activate_observations', 'setup_template', 'setup_spinup', 'run_spinup', 'run_preview'] | -| RunDir | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | | RUNDIR | ['src/geoschem_run_scripts/run_bkgd_simulation.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/geoschem_run_scripts/run_jacobian_simulations.sh'] | ['src/geoschem_run_scripts/run_bkgd_simulation.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | +| RunDir | ['src/utilities/cleanup_script.sh'] | ['src/utilities/cleanup_script.sh'] | [] | [] | | rundir_num | ['src/components/kalman_component/kalman.sh'] | ['src/components/kalman_component/kalman.sh'] | ['run_period'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix'] | | RunDirs | ['run_imi.sh', 'src/components/statevector_component/statevector.sh', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/components/spinup_component/spinup.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh', 'src/components/preview_component/preview.sh'] | ['run_imi.sh', 'src/components/setup_component/setup.sh'] | ['setup_imi'] | ['create_statevector', 'reduce_dimension', 'setup_kf', 'run_kf', 'run_period', 'setup_posterior', 'run_posterior', 'setup_inversion', 'run_inversion', 'run_notebooks', 'setup_jacobian', 'create_simulation_dir', 'run_jacobian', 'setup_imi', 'activate_observations', 'setup_template', 'setup_spinup', 'run_spinup', 'run_hemco_prior_emis', 'run_hemco_sa', 'run_preview'] | | RunFilesPath | ['src/components/setup_component/setup.sh'] | ['src/components/setup_component/setup.sh'] | ['setup_imi'] | ['setup_imi', 'activate_observations'] | @@ -326,8 +326,8 @@ Note: This does not include variables defined in python scripts. | start_elem | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['calculate_tracer_end'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number'] | | start_element | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['create_simulation_dir'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number'] | | start_time | ['run_imi.sh'] | ['run_imi.sh'] | [] | [] | -| startDate | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | StartDate | ['config.yml', 'run_imi.sh', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml', 'src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/jacobian_component/jacobian.sh', 'src/components/setup_component/setup.sh', 'src/components/template_component/template.sh', 'src/components/spinup_component/spinup.sh', 'src/components/hemco_prior_emis_component/hemco_prior_emis.sh', 'src/inversion_scripts/run_inversion.sh'] | ['config.yml', 'envs/Harvard-Cannon/config.harvard-cannon.yml', 'envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml'] | [] | ['setup_kf', 'run_period', 'setup_posterior', 'run_posterior', 'setup_jacobian', 'create_simulation_dir', 'run_jacobian', 'setup_imi', 'setup_template', 'setup_spinup', 'run_hemco_prior_emis'] | +| startDate | ['src/write_BCs/config_boundary_conditions.yml', 'src/write_BCs/run_boundary_conditions.sh'] | ['src/write_BCs/config_boundary_conditions.yml'] | [] | [] | | StartDate_i | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh', 'src/components/inversion_component/inversion.sh'] | ['src/components/kalman_component/kalman.sh', 'src/components/posterior_component/posterior.sh'] | ['run_period', 'run_posterior'] | ['setup_kf', 'run_kf', 'run_period', 'get_last_rundir_suffix', 'setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value', 'run_inversion'] | | StartMonth | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | | state_vector_path | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['src/components/statevector_component/statevector.sh', 'src/components/preview_component/preview.sh'] | ['reduce_dimension', 'run_preview'] | ['create_statevector', 'reduce_dimension', 'run_preview'] | @@ -349,7 +349,7 @@ Note: This does not include variables defined in python scripts. | xhat | ['src/components/posterior_component/posterior.sh'] | ['src/components/posterior_component/posterior.sh'] | ['generate_optimized_BC_values', 'generate_optimized_OH_value'] | ['setup_posterior', 'run_posterior', 'generate_optimized_BC_values', 'generate_optimized_OH_value'] | | xstr | ['src/geoschem_run_scripts/run_bkgd_simulation.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/components/jacobian_component/jacobian.sh'] | ['src/geoschem_run_scripts/run_bkgd_simulation.sh', 'src/geoschem_run_scripts/run_prior_simulation.sh', 'src/geoschem_run_scripts/run_jacobian_simulations.sh', 'src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number'] | | xUSE | ['src/components/jacobian_component/jacobian.sh'] | ['src/components/jacobian_component/jacobian.sh'] | ['setup_jacobian'] | ['setup_jacobian', 'create_simulation_dir', 'add_new_tracer', 'run_jacobian', 'generate_BC_perturb_values', 'calculate_tracer_end', 'calculate_num_jacobian_runs', 'is_number'] | -| YEAR | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | Year | ['src/utilities/crop_met.sh'] | ['src/utilities/crop_met.sh'] | [] | [] | +| YEAR | ['src/utilities/find_corrupt_files.sh'] | ['src/utilities/find_corrupt_files.sh'] | [] | ['download_aws_files', 'report'] | | YYYY | ['src/components/template_component/template.sh'] | [] | [] | ['setup_template'] | | yyyymmdd | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | ['src/geoschem_run_scripts/run_jacobian_simulations.sh'] | [] | [] | \ No newline at end of file