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validate-terms fails on "new" schema that includes authorship #155

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jhpoelen opened this issue Mar 21, 2023 · 0 comments
Open

validate-terms fails on "new" schema that includes authorship #155

jhpoelen opened this issue Mar 21, 2023 · 0 comments

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@jhpoelen
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Currently,

echo -e "\tHomo sapiens" | nomer append pbdb | cut -f4- | nomer validate-terms

produces "FAIL" validations.

Root cause - the validation assume a schema that excluded authorship (introduced by default in nomer 0.3.0). This caused the columns after id/name to misaligned. And this misalignment of columns caused validations like pathIds to fail.
jhpoelen pushed a commit to globalbioticinteractions/taxon-graph-builder that referenced this issue Mar 21, 2023
include 0.4.0 notes; workaround for globalbioticinteractions/nomer#155
db9fa6a
jhpoelen pushed a commit to globalbioticinteractions/taxon-graph-builder that referenced this issue Mar 22, 2023
align header to workaround globalbioticinteractions/nomer#155
cd06a76
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@jhpoelen