rMAP-1.0-MacOs-installer.yml

name: rMAP-1.0
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - abricate=1.0.1
  - fastqc=0.11.9
  - multiqc=1.9
  - snippy=4.3.6
  - snpeff=4.5covid19
  - ncbi-amrfinderplus=3.8.4
  - prokka=1.14.6
  - prodigal=2.6.3
  - freebayes=1.3.2
  - unicycler
  - mlst=2.19.0
  - assembly-stats=1.0.1
  - sra-tools
  - bwa=0.7.17
  - kleborate=1.0.0
  - mafft=7.471
  - quast=5.0.2
  - r-base=4.0.2
  - trimmomatic=0.39
  - megahit=1.2.9
  - parallel=20200722
  - prinseq=0.20.4
  - shovill=1.0.9
  - vt
  - fasttree=2.1.10
  - samclip=0.4.0
  - nextflow=20.07.1
  - any2fasta=0.4.2
  - python=3.7.8
  - biopython.convert=1.0.3
  - iqtree=2.0.3
  - bmge=1.12
  - samtools=1.9
  - roary=3.13.0
  - ismapper=2.0.1
  - lxml=4.5.2
  - cairosvg=2.4.2