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ro.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ro.owl#"
xml:base="http://purl.obolibrary.org/obo/ro.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:cito="http://purl.org/spar/cito/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro.owl">
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI"> https://github.com/oborel/obo-relations/</foaf:homepage>
<dc:title xml:lang="en">OBO Relations Ontology</dc:title>
<dc:description xml:lang="en">The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies.</dc:description>
<dc:source rdf:resource="http://obofoundry.org/ro"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/annotations.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/core.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/el-constraints.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/go-biotic.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/go_mf_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/pato_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/rohom.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/temporal-intervals.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2016-02-24/ro.owl"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000426 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a string or literal, where the value of the string or literal is a Common Logic sentence of collection of sentences that define the Object Property.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/IAO_0000589 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000589">
<rdfs:label xml:lang="en">OBO foundry unique label</rdfs:label>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0002161 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002161">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">never in taxon</rdfs:label>
<obo:IAO_0000115>x never in taxon T if and only if T is a class, and x does not instantiate the class expression "in taxon some T". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL.</obo:IAO_0000115>
<obo:IAO_0000425>?X DisjointWith RO_0002162 some ?Y </obo:IAO_0000425>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000112>tooth SubClassOf 'never in taxon' value 'Aves'</obo:IAO_0000112>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/17921072"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/20973947"/>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002171 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002171">
<rdfs:label xml:lang="en">mutually spatially disjoint with</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern</foaf:page>
<obo:IAO_0000115>A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B.</obo:IAO_0000115>
<obo:IAO_0000425>Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)</obo:IAO_0000425>
<obo:IAO_0000118>non-overlapping with</obo:IAO_0000118>
<obo:IAO_0000118>shares no parts with</obo:IAO_0000118>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/RO_0002163"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002172 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002172">
<rdfs:label xml:lang="en">taxonomic class assertion</rdfs:label>
<obo:IAO_0000115>An assertion that holds between an ontology class and an organism taxon class, which is intepreted to yield some relationship between instances of the ontology class and the taxon.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002173 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002173">
<rdfs:label xml:lang="en">ambiguous for taxon</rdfs:label>
<obo:IAO_0000115>S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002174 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002174">
<rdfs:label xml:lang="en">dubious for taxon</rdfs:label>
<obo:IAO_0000115>S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0002-6601-2165</obo:IAO_0000117>
<rdfs:comment>This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002175 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002175">
<rdfs:label xml:lang="en">present in taxon</rdfs:label>
<obo:IAO_0000117>https://orcid.org/0000-0002-6601-2165</obo:IAO_0000117>
<obo:IAO_0000115>S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002416 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002416">
<rdfs:label xml:lang="en">logical macro assertion</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/ShortcutRelations</foaf:page>
<obo:IAO_0000115>An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL.</obo:IAO_0000115>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002419 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002419">
<rdfs:label xml:lang="en">annotation property cardinality</rdfs:label>
<obo:IAO_0000115>An assertion that holds between an OWL Annotation Property P and a non-negative integer N, with the interpretation: for any P(i j) it must be the case that | { k : P(i k) } | = N.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002423"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002420 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002420">
<rdfs:label xml:lang="en">logical macro assertion on a class</rdfs:label>
<obo:IAO_0000115>A logical macro assertion whose domain is an IRI for a class</obo:IAO_0000115>
<obo:IAO_0000116>The domain for this class can be considered to be owl:Class, but we cannot assert this in OWL2-DL</obo:IAO_0000116>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002421 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002421">
<rdfs:label xml:lang="en">logical macro assertion on a property</rdfs:label>
<obo:IAO_0000115>A logical macro assertion whose domain is an IRI for a property</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002422 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002422">
<rdfs:label xml:lang="en">logical macro assertion on an object property</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002421"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002423 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002423">
<rdfs:label xml:lang="en">logical macro assertion on an annotation property</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002421"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002474 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002474">
<rdfs:label>dispositional interpretation</rdfs:label>
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a dispositional interpretation that elucidates how OWL Class Axioms or OWL Individuals that use this property are to be interpreted in a dispositional context. For example, A binds B may be interpreted as A have a mutual disposition that is realized by binding to the other one.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002475 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002475">
<rdfs:label>has no connections with</rdfs:label>
<obo:IAO_0000112>'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'</obo:IAO_0000112>
<obo:IAO_0000118>shares no connection with</obo:IAO_0000118>
<obo:IAO_0000425>Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))</obo:IAO_0000425>
<obo:IAO_0000115>A is has_no_connections_with B if there are no parts of A or B that have a connection with the other.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002483 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002483">
<rdfs:label>inherited annotation property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002484 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002484">
<rdfs:label>curator guidance link</rdfs:label>
<obo:IAO_0000115>Connects an ontology entity (class, property, etc) to a URL from which curator guidance can be obtained. This assertion is inherited in the same manner as functional annotations (e.g. for GO, over SubClassOf and part_of)</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002483"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002504 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002504">
<rdfs:label>always present in taxon</rdfs:label>
<obo:IAO_0000115>S always_present_in_taxon T if every fully formed member of taxon T has part some S, or is an instance of S</obo:IAO_0000115>
<obo:IAO_0000116>This is a very strong relation. Often we will not have enough evidence to know for sure that there are no species within a lineage that lack the structure - loss is common in evolution. However, there are some statements we can make with confidence - no vertebrate lineage could persist without a brain or a heart. All primates are limbed. </obo:IAO_0000116>
<obo:IAO_0000118>never lost in</obo:IAO_0000118>
<obo:IAO_0000112>brain always_present_in_taxon 'Vertebrata'</obo:IAO_0000112>
<obo:IAO_0000112>forelimb always_present_in_taxon Euarchontoglires</obo:IAO_0000112>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002175"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002535 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002535">
<rdfs:label>temporal logical macro assertion on a class</rdfs:label>
<obo:IAO_0000232>This properties were created originally for the annotation of developmental or life cycle stages, such as for example Carnegie Stage 20 in humans. </obo:IAO_0000232>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002536 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002536">
<rdfs:label>measurement property has unit</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002423"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002537 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002537">
<rdfs:label>has start time value</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002538 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002538">
<rdfs:label>has end time value</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002539 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002539">
<rdfs:label>start, days post fertilization</rdfs:label>
<obo:IAO_0000115>Count of number of days intervening between the start of the stage and the time of fertilization according to a reference model. Note that the first day of development has the value of 0 for this property.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002540 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002540">
<rdfs:label>end, days post fertilization</rdfs:label>
<obo:IAO_0000115>Count of number of days intervening between the end of the stage and the time of fertilization according to a reference model. Note that the first day of development has the value of 1 for this property.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002541 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002541">
<rdfs:label>start, years post birth</rdfs:label>
<obo:IAO_0000115>Count of number of years intervening between the start of the stage and the time of birth according to a reference model. Note that the first year of post-birth development has the value of 0 for this property, and the period during which the child is one year old has the value 1.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002542 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002542">
<rdfs:label>end, years post birth</rdfs:label>
<obo:IAO_0000115>Count of number of years intervening between the end of the stage and the time of birth according to a reference model. Note that the first year of post-birth development has the value of 1 for this property, and the period during which the child is one year old has the value 2</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002543 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002543">
<rdfs:label>start, months post birth</rdfs:label>
<obo:IAO_0000115>Count of number of months intervening between the start of the stage and the time of birth according to a reference model. Note that the first month of post-birth development has the value of 0 for this property, and the period during which the child is one month old has the value 1.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002544 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002544">
<rdfs:label>end, months post birth</rdfs:label>
<obo:IAO_0000115>Count of number of months intervening between the end of the stage and the time of birth according to a reference model. Note that the first month of post-birth development has the value of 1 for this property, and the period during which the child is one month old has the value 2</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002545 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002545">
<rdfs:label>month of gestation</rdfs:label>
<obo:IAO_0000115>Defines the start and end of a stage with a duration of 1 month, relative to either the time of fertilization or last menstrual period of the mother (to be clarified), counting from one, in terms of a reference model. Thus if month_of_gestation=3, then the stage is 2 month in.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002546 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002546">
<rdfs:label>has developmental stage marker</rdfs:label>
<obo:IAO_0000115>A relationship between a stage class and an anatomical structure or developmental process class, in which the stage is characterized by the appearance of the structure or the occurrence of the biological process</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002547 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002547">
<rdfs:label>start, days post coitum</rdfs:label>
<obo:IAO_0000232>For mouse staging: assuming that it takes place around midnight during a 7pm to 5am dark cycle (noon of the day on which the vaginal plug is found, the embryos are aged 0.5 days post coitum)</obo:IAO_0000232>
<obo:IAO_0000115>Count of number of days intervening between the start of the stage and the time of coitum.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002548 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002548">
<rdfs:label>end, days post coitum</rdfs:label>
<obo:IAO_0000115>Count of number of days intervening between the end of the stage and the time of coitum.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002549 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002549">
<rdfs:label>start, weeks post birth</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002550 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002550">
<rdfs:label>end, weeks post birth</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002560 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002560">
<rdfs:label>is asymmetric relational form of process class</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/InteractionRelations</foaf:page>
<obo:IAO_0000115>If Rel is the relational form of a process Pr, then it follow that: Rel(x,y) <-> exists p : Pr(p), x subject-partner-in p, y object-partner-in p</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002562"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002561 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002561">
<rdfs:label>is symmetric relational form of process class</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/InteractionRelations</foaf:page>
<obo:IAO_0000115>If Rel is the relational form of a process Pr, then it follow that: Rel(x,y) <-> exists p : Pr(p), x partner-in p, y partner-in p</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002562"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002562 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002562">
<rdfs:label>is relational form of process class</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/InteractionRelations</foaf:page>
<obo:IAO_0000115>R is the relational form of a process if and only if either (1) R is the symmetric relational form of a process or (2) R is the asymmetric relational form of a process</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002594"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002575 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002575">
<rdfs:label>is direct form of</rdfs:label>
<dc:creator>Chris Mungall</dc:creator>
<obo:IAO_0000115>relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y</obo:IAO_0000115>
<obo:IAO_0000116>The general property hierarchy is:
"directly P" SubPropertyOf "P"
Transitive(P)
Where we have an annotation assertion
"directly P" "is direct form of" "P"</obo:IAO_0000116>
<obo:RO_0002423>If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'</obo:RO_0002423>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002579 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002579">
<rdfs:label>is indirect form of</rdfs:label>
<obo:IAO_0000115>relation p is the indirect form of relation q iff p is a subPropertyOf q, and there exists some p' such that p' is the direct form of q, p' o p' -> p, and forall x,y : x q y -> either (1) x p y or (2) x p' y</obo:IAO_0000115>
<dc:creator>Chris Mungall</dc:creator>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002580 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002580">
<rdfs:label>logical macro assertion on an axiom</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002581 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002581">
<rdfs:label>is a defining property chain axiom</rdfs:label>
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002580"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002582 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002582">
<rdfs:label>is a defining property chain axiom where second argument is reflexive</rdfs:label>
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002581"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002594 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002594">
<rdfs:label>is relational form of a class</rdfs:label>
<obo:IAO_0000115>An annotation property that connects an object property to a class, where the object property is derived from or a shortcut property for the class. The exact semantics of this annotation may vary on a case by case basis.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002601 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002601">
<rdfs:label>logical macro assertion involving identity</rdfs:label>
<obo:IAO_0000115>A shortcut relationship that holds between two entities based on their identity criteria</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002602 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002602">
<rdfs:label>in approximate one to one relationship with</rdfs:label>
<obo:IAO_0000115>A shortcut relationship between two entities x and y1, such that the intent is that the relationship is functional and inverse function, but there is no guarantee that this property holds.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002601"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002603 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002603">
<rdfs:label>is approximately equivalent to</rdfs:label>
<obo:IAO_0000232>The precise meaning of this property is dependent upon some contexts. It is intended to group multiple possible formalisms. Possibilities include a probabilistic interpretation, for example, Pr(x=y) > 0.95. Other possibilities include reified statements of belief, for example, "Database D states that x=y"</obo:IAO_0000232>
<obo:IAO_0000115>x is approximately equivalent to y if it is the case that x is equivalent, identical or near-equivalent to y</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002602"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002604 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002604">
<rdfs:label>is opposite of</rdfs:label>
<obo:IAO_0000112>'anterior end of organism' is-opposite-of 'posterior end of organism'</obo:IAO_0000112>
<obo:IAO_0000112>'increase in temperature' is-opposite-of 'decrease in temperature'</obo:IAO_0000112>
<obo:IAO_0000115>x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002602"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002605 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002605">
<rdfs:label>is indistinguishable from</rdfs:label>
<obo:IAO_0000115>x is indistinguishable from y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002603"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002611 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002611">
<rdfs:label>evidential logical macro assertion on an axiom</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002580"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002612 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002612">
<rdfs:label>axiom has evidence</rdfs:label>
<obo:IAO_0000232>This annotation property is intended to be used in an OWL Axiom Annotation to connect an OWL Axiom to an instance of an ECO (evidence type ontology class). Because in OWL, all axiom annotations must use an Annotation Property, the value of the annotation cannot be an OWL individual, the convention is to use an IRI of the individual.</obo:IAO_0000232>
<obo:IAO_0000115>A relationship between a sentence and an instance of a piece of evidence in which the evidence supports the axiom</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002611"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002613 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002613">
<rdfs:label>axiom contradicted by evidence</rdfs:label>
<obo:IAO_0000232>This annotation property is intended to be used in an OWL Axiom Annotation to connect an OWL Axiom to an instance of an ECO (evidence type ontology class). Because in OWL, all axiom annotations must use an Annotation Property, the value of the annotation cannot be an OWL individual, the convention is to use an IRI of the individual.</obo:IAO_0000232>
<obo:IAO_0000115>A relationship between a sentence and an instance of a piece of evidence in which the evidence contradicts the axiom</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002611"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002617 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002617">
<rdfs:label>is representative IRI for equivalence set</rdfs:label>
<rdfs:seeAlso>OWLAPI Reasoner documentation for representativeElement, which follows a similar idea, but selects an arbitrary member</rdfs:seeAlso>
<obo:IAO_0000112>In the context of a particular project, the IRI with CURIE NCBIGene:64327 (which in this example denotes a class) is considered to be representative. This means that if we have equivalent classes with IRIs OMIM:605522, ENSEMBL:ENSG00000105983, HGNC:13243 forming an equivalence set, the NCBIGene is considered the representative member IRI. Depending on the policies of the project, the classes may be merged, or the NCBIGene IRI may be chosen as the default in a user interface context.</obo:IAO_0000112>
<obo:IAO_0000232>If it is necessary to make the context explicit, an axiom annotation can be added to the annotation assertion</obo:IAO_0000232>
<obo:IAO_0000115>this property relates an IRI to the xsd boolean value "True" if the IRI is intended to be the representative IRI for a collection of classes that are mutually equivalent.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002601"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ro/subsets#ro-eco -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ro/subsets#ro-eco">
<rdfs:label>eco subset</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/spar/cito/citesAsAuthority -->
<owl:AnnotationProperty rdf:about="http://purl.org/spar/cito/citesAsAuthority"/>
<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subset_property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"/>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Submissions:PartOf"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000062"/>
</owl:propertyChainAxiom>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000063">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002222"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002092"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>
</owl:propertyChainAxiom>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0000052 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0000052">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002314"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0000057 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0000057">
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000055"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0000052"/>
</owl:propertyChainAxiom>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0000057"/>
</owl:propertyChainAxiom>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0000300 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000300">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label xml:lang="en">in neural circuit with</rdfs:label>
<obo:IAO_0000426 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">(forall (?x ?y)
(iff
(neural_circuit_path ?x ?y)
(and
("neuron ; CL_0000540" ?x)
("neuron ; CL_0000540" ?y)
(or
(synapsed_by ?x ?y)
(synapsed_to ?x ?y)))))
(forall (...s ?x ?y ?z)
(iff
(neural_circuit_path ...s ?x ?y ?z)
(and
(neural_circuit_path ...s ?x ?y)
("neuron ; CL_0000540" ?z)
(or
(synapsed_by ?y ?z)
(synapsed_to ?y ?z)))))
(forall (?x ?y)
(iff
(in_neural_circuit_with ?x ?y)
(exists (...s)
(neural_circuit_path ?x ...s ?y)))) </obo:IAO_0000426>
<obo:IAO_0000115 xml:lang="en">A relation that holds between two neurons connected directly via a synapse, or indirectly via a series of synaptically connected neurons.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<cito:citesAsAuthority rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22402613"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000301 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000301">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label xml:lang="en">upstream in neural circuit with</rdfs:label>
<obo:IAO_0000426 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">(forall (?x ?y)
(iff
(upstream_neural_circuit_path ?x ?y)
(and
("neuron ; CL_0000540" ?x)
("neuron ; CL_0000540" ?y)
(synapsed_to ?x ?y))))
(forall (...s ?x ?y ?z)
(iff
(upstream_neural_circuit_path ...s ?x ?y ?z )
(and
(upstream_neural_circuit_path ...s ?x ?y)
("neuron ; CL_0000540" ?z)
(synapsed_to ?y ?z))))
(forall (?x ?y)
(iff
(upstream_in_neural_circuit_with ?x ?y)
(exists (...s)
(upstream_neural_circuit_path ?x ...s ?y))))</obo:IAO_0000426>
<obo:IAO_0000115 xml:lang="en">A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000300"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<cito:citesAsAuthority rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22402613"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0000302 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000302">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label xml:lang="en">downstream in neural circuit with</rdfs:label>
<obo:IAO_0000426 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">(forall (?x ?y)
(iff
(downstream_neural_circuit_path ?x ?y)
(and
("neuron ; CL_0000540" ?x)
("neuron ; CL_0000540" ?y)
(synapsed_by ?x ?y))))
(forall (...s ?x ?y ?z)
(iff
(downstream_neural_circuit_path ...s ?x ?y ?z )
(and
(downstream_neural_circuit_path ...s ?x ?y)
("neuron ; CL_0000540" ?z)
(synapsed_by ?y ?z))))
(forall (?x ?y)
(iff
(downstream_in_neural_circuit_with ?x ?y)
(exists (...s)
(downstream_neural_circuit_path ?x ...s ?y))))
</obo:IAO_0000426>
<obo:IAO_0000115 xml:lang="en">A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000300"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<cito:citesAsAuthority rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22402613"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001018 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001018">
<rdfs:label xml:lang="en">contained in</rdfs:label>
<obo:IAO_0000116>Containment is location not involving parthood, and arises only where some immaterial continuant is involved.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Intended meaning:
domain: material entity
range: spatial region or site (immaterial continuant)
</obo:IAO_0000116>
<obo:IAO_0000111 xml:lang="en">contained in</obo:IAO_0000111>
<obo:IAO_0000118 xml:lang="en">contained_in</obo:IAO_0000118>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0001019"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0001025"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
</owl:propertyChainAxiom>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001019 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001019">
<rdfs:label xml:lang="en">contains</rdfs:label>
<obo:IAO_0000111 xml:lang="en">contains</obo:IAO_0000111>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002000 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002000">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002323"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0002001 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002001">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:label xml:lang="en">aligned with</rdfs:label>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002002 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002002">
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002323"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/RO_0002003 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002003">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">electrically_synapsed_to</rdfs:label>
<obo:IAO_0000115>A relation that holds between two neurons that are electrically coupled via gap junctions.</obo:IAO_0000115>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000300"/>
<cito:citesAsAuthority rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22402613"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002004 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002004">
<rdfs:label xml:lang="en">tracheates</rdfs:label>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The relationship that holds between a trachea or tracheole and an antomical structure that is contained in (and so provides an oxygen supply to).</obo:IAO_0000115>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0001018"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002005 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002005">
<rdfs:label xml:lang="en">innervated_by</rdfs:label>
<cito:citesAsAuthority rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://www.ncbi.nlm.nih.gov/pubmed/22402613</cito:citesAsAuthority>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002134"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002006 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002006">
<rdfs:label xml:lang="en">has synaptic terminal of</rdfs:label>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002130"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002007 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002007">
<rdfs:label xml:lang="en">bounding layer of</rdfs:label>
<obo:IAO_0000117>David Osumi-Sutherland</obo:IAO_0000117>
<rdfs:comment>A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.</rdfs:comment>
<obo:IAO_0000115>X outer_layer_of Y iff:
. X :continuant that bearer_of some PATO:laminar
. X part_of Y
. exists Z :surface
. X has_boundary Z
. Z boundary_of Y
has_boundary: http://purl.obolibrary.org/obo/RO_0002002
boundary_of: http://purl.obolibrary.org/obo/RO_0002000</obo:IAO_0000115>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:domain>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>