diff --git a/batch/vep/build_vep_cache.sh b/batch/vep/build_vep_cache.sh index a287e79..080c54c 100755 --- a/batch/vep/build_vep_cache.sh +++ b/batch/vep/build_vep_cache.sh @@ -35,7 +35,7 @@ set -euo pipefail readonly release="${ENSEMBL_RELEASE:-104}" readonly species="${VEP_SPECIES:-homo_sapiens}" # or "${VEP_SPECIES:-mus_musculus}" -readonly assembly="${GENOME_ASSEMBLY:-GRCh38}" # or "${GENOME_ASSEMBLY:-GRCh37}" for homo_sapiens or "${GENOME_ASSEMBLY:-GRCm38}" for mus_musculus +readonly assembly="${GENOME_ASSEMBLY:-GRCh38}" # or "${GENOME_ASSEMBLY:-GRCh37}" for homo_sapiens or "${GENOME_ASSEMBLY:-GRCm39}" for mus_musculus readonly work_dir="vep_cache" mkdir -p "${work_dir}"