Data loading based on pantograph RDF via SPARQL

[6br]

Jerven will use spodgi to output a complete triple store graph genome. We'll then have component_segmentation and schematize add to that triple store and use it as the only data source. It's not performant for gigabase genomes, but totally sufficient for COVID and simpler to develop RDF logic against a pure TTL.
Here we need to load data via SPARQL query based on pantograph ontologies graph-genome/graph-genome.github.io#15.

[6br]

Simon suggested that we have create another repository and provide npm package as a proxy between SPARQL endpoint and Schematize.

[subwaystation]

I think it is better to implement the SPARQL queries for our Pantograph RDF in a separate repository:

• Schematize should focus on visualization
• Form the code in a way suitable for Schematize
• Automatic testing, specifically of federated queries
• Lot's of query examples
• Installable via npm
• Documentation not only of queries but how to set up your own Triple-Store, etc.
• We can advertise it as an independent tool to other browser developers (e.g. JBrowse2) so they can play around with the data. Explore new visualization concepts. And reference us and especially your concept @josiahseaman.

Would that be fine with @josiahseaman @6br @dimatr ?