Activity
Merge branch 'main' of github.com:grunwaldlab/krisp
Merge branch 'main' of github.com:grunwaldlab/krisp
Merge branch 'main' of github.com:grunwaldlab/krisp
Merge branch 'main' of github.com:grunwaldlab/krisp
reformat package to standard src layout
reformat package to standard src layout
change warning message when alignments cannot be printed
change warning message when alignments cannot be printed
fix bug with column name check
fix bug with column name check
added error when samples specified in the metadata are not present in…
added error when samples specified in the metadata are not present in…
added region_id column that makes it easier to find alignments that g…
added region_id column that makes it easier to find alignments that g…
Added --var_location and --crrna_len options to control positioning a…
Added --var_location and --crrna_len options to control positioning a…
added total group counts to alignment output
added total group counts to alignment output
replace code to avoid overlapping variants with handling alignment re…
replace code to avoid overlapping variants with handling alignment re…
added --min_samp_prop to filter by proprotion of samples in each grou…
added --min_samp_prop to filter by proprotion of samples in each grou…
added --min_var_qual and --min_map_qual filters/options
added --min_var_qual and --min_map_qual filters/options
added min_freq option to filter out low-abundance alleles
added min_freq option to filter out low-abundance alleles
Warn if fewer samples than the minimum numbers specified by --min_sam…
Warn if fewer samples than the minimum numbers specified by --min_sam…
added error when one or more user-defined groups are not present in t…
added error when one or more user-defined groups are not present in t…
Merge branch 'main' of github.com:grunwaldlab/krisp
Merge branch 'main' of github.com:grunwaldlab/krisp