diff --git a/rules/RNAEditingIndexer.smk b/rules/RNAEditingIndexer.smk index d911dce..c4db3f3 100755 --- a/rules/RNAEditingIndexer.smk +++ b/rules/RNAEditingIndexer.smk @@ -37,7 +37,7 @@ rule RNAEditingIndexer: threads: 16 resources: - mem_mb = (lambda wildcards, attempt: attempt * 40960), + mem_mb = (lambda wildcards, attempt: attempt * 20480), time_min = (lambda wildcards, attempt: attempt * 720) params: bam_dir=os.path.normpath(OUTPUT_DIR + "/RNAEditingIndexer/input/"), @@ -77,7 +77,7 @@ rule RNAEditingIndexer_summary: threads: 1 resources: - mem_mb = (lambda wildcards, attempt: attempt * 5120), + mem_mb = (lambda wildcards, attempt: attempt * 2048), time_min = (lambda wildcards, attempt: attempt * 60) params: samples_order_for_ggplot=config["samples_order_for_ggplot"] diff --git a/rules/SPRINT.smk b/rules/SPRINT.smk index 5bf7200..180ebee 100755 --- a/rules/SPRINT.smk +++ b/rules/SPRINT.smk @@ -173,7 +173,7 @@ rule SPRINT_summary: threads: 1 resources: - mem_mb = (lambda wildcards, attempt: attempt * 5000), + mem_mb = (lambda wildcards, attempt: attempt * 2048), time_min = (lambda wildcards, attempt: attempt * 60) params: samples_order_for_ggplot=config["samples_order_for_ggplot"] diff --git a/rules/symlink_qc_filtering.smk b/rules/symlink_qc_filtering.smk index 4b158f1..47eb7fb 100755 --- a/rules/symlink_qc_filtering.smk +++ b/rules/symlink_qc_filtering.smk @@ -81,7 +81,7 @@ rule fastp: threads: 5 resources: - mem_mb = (lambda wildcards, attempt: attempt * 4096), + mem_mb = (lambda wildcards, attempt: attempt * 1024), time_min = (lambda wildcards, attempt: attempt * 720) conda : PIPELINE_DIR + "/envs/conda/fastp.yaml" @@ -114,7 +114,7 @@ rule multiqc: threads: 1 resources: - mem_mb = (lambda wildcards, attempt: attempt * 5120), + mem_mb = (lambda wildcards, attempt: attempt * 250), time_min = (lambda wildcards, attempt: attempt * 720) conda : PIPELINE_DIR + "/envs/conda/multiqc.yaml"