diff --git a/workflow/Snakefile b/workflow/Snakefile index f3d09f6..10a581c 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -23,7 +23,7 @@ rule generate_metadata: mask = 'Mask/{image}_mask.png' log: 'logs/generate_metadata_{image}.log' container: - 'docker://ghcr.io/hdr-bgnn/drexel_metadata:0.5' + 'docker://ghcr.io/hdr-bgnn/drexel_metadata:0.6' shell: 'gen_metadata.py {input} --device cpu --outfname {output.metadata} --maskfname {output.mask} > {log} 2>&1' # Transform metadata into a format compatible with the following rules @@ -52,7 +52,7 @@ rule segment_image: output: 'Segmented/{image}_segmented.png' log: 'logs/segment_image_{image}.log' container: - 'docker://ghcr.io/hdr-bgnn/bgnn-trait-segmentation:0.0.6' + 'docker://ghcr.io/hdr-bgnn/bgnn-trait-segmentation:0.0.7' shell: 'segmentation_main_rescale_origin.py {input} {output} > {log} 2>&1'