SampleModel.ini

[physicell_model]
executable = ./examples/PhysiCell-master/virus-sample
configFile_ref = ./examples/PhysiCell-master/sample_projects/virus_macrophage/config/PhysiCell_settings.xml
numReplicates = 2
parameters = {
    ".//*[@name='epithelial cell']/custom_data/viral_replication_rate": [None,"viral_replication_rate"],
    ".//*[@name='epithelial cell']/custom_data/min_virion_count": [None,"min_virion_count"],
    ".//*[@name='epithelial cell']/custom_data/burst_virion_count": [None, "burst_virion_count"],
    ".//*[@name='epithelial cell']/custom_data/virion_threshold_for_interferon": [None, "virion_threshold_for_interferon"], 
    ".//*[@name='macrophage']/custom_data/min_virion_detection_threshold": [None, "min_virion_detection_threshold"]
    }

[physicell_model_2]
projName = Template
executable = ./examples/PhysiCell-master/virus-sample
configFile_ref = ./examples/PhysiCell-master/sample_projects/virus_macrophage/config/PhysiCell_settings.xml
configFile_name = config_S%%06d_%%02d.xml
configFile_folder = config2/
outputs_folder = output2/
outputs_folder_name = output_%%06d_%%02d/
omp_num_threads = 8
numReplicates = 1
parameters = {
    ".//*[@name='epithelial cell']/custom_data/viral_replication_rate": [None,"viral_replication_rate"],
    ".//*[@name='epithelial cell']/custom_data/min_virion_count": [None,"min_virion_count"],
    ".//overall/max_time" : 120
    }

[asymmetric_division]
executable = ./examples/PhysiCell-master/project
configFile_ref = ./examples/PhysiCell-master/sample_projects/asymmetric_division/config/PhysiCell_settings.xml
numReplicates = 2
omp_num_threads = 4
parameters = {
    ".//*[@name='stem']/phenotype/cycle/phase_durations/duration" : [None, "cycle_duration_stem_cell"],
    ".//overall/max_time" : 120
    }
rulesFile_ref = ./examples/PhysiCell-master/sample_projects/asymmetric_division/config/cell_rules.csv
parameters_rules = {
    "stem,contact with progenitor_1,decreases,asymmetric division to progenitor_1,saturation" : [None, "asym_div_to_prog_1_sat"],
    "stem,contact with progenitor_1,increases,asymmetric division to progenitor_2,saturation" : [None, "asym_div_to_prog_2_sat"]
    }