forked from obophenotype/brain_data_standards_ontologies
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathbdso-simple.json
615 lines (615 loc) · 27.7 KB
/
bdso-simple.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
{
"graphs" : [ {
"id" : "http://purl.obolibrary.org/obo/pcl/bdso-simple.json",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/title",
"val" : "Brain Data Standards Cell Ontology"
}, {
"pred" : "http://purl.org/dc/terms/license",
"val" : "http://creativecommons.org/licenses/by/4.0/"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-03-01"
} ],
"version" : "http://purl.obolibrary.org/obo/pcl/releases/2023-03-01/bdso-simple.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/BFO_0000050",
"lbl" : "part_of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a core relation that holds between a part and its whole"
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"xrefs" : [ {
"val" : "BFO:0000050"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "is part of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my brain is part of my body (continuant parthood, two material entities)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this day is part of this year (occurrent parthood)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "part_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000002"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000003"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000004"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000017"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000019"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000020"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000031"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "external"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "quality"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "part_of"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000051",
"lbl" : "has_part",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a core relation that holds between a whole and its part"
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"xrefs" : [ {
"val" : "BFO:0000051"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "has part"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my body has part my brain (continuant parthood, two material entities)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this year has part this day (occurrent parthood)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_part"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "external"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "quality"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "has_part"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000028",
"lbl" : "symbol",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000115",
"lbl" : "definition",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0100001",
"lbl" : "term replaced by",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0000100",
"lbl" : "synonym",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010051",
"lbl" : "cell_type_rank",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010052",
"lbl" : "cell_types_count",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010053",
"lbl" : "cell_subclasses_count",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010054",
"lbl" : "cell_classes_count",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010055",
"lbl" : "has_age",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010056",
"lbl" : "has_sex",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010057",
"lbl" : "has_brain_region",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010058",
"lbl" : "has nsforest marker",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010059",
"lbl" : "cluster id",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010060",
"lbl" : "cell_count",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010061",
"lbl" : "nuclei_count",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/PCL_0010062",
"lbl" : "fbeta_confidence_score",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000053",
"lbl" : "has characteristic",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Inverse of characteristic_of"
},
"xrefs" : [ {
"val" : "RO:0000053"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "bearer of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this apple is bearer of this red color"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this vase is bearer of this fragility"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "bearer_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is bearer of"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "external"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "bearer_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002100",
"lbl" : "has soma location",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Relation between a neuron and an anatomical structure that its soma is part of."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-7073-9172"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000424",
"val" : "<http://purl.obolibrary.org/obo/BFO_0000051> some (\n <http://purl.obolibrary.org/obo/GO_0043025> and <http://purl.obolibrary.org/obo/BFO_0000050> some ?Y)"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002162",
"lbl" : "in taxon",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed."
},
"comments" : [ "Connects a biological entity to its taxon of origin." ],
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"xrefs" : [ {
"val" : "RO:0002162"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0001-9227-417X"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-6601-2165"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/17921072"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20973947"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "in_taxon"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002215",
"lbl" : "capable of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. "
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"xrefs" : [ {
"val" : "RO:0002215"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-6601-2165"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has function realized in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"."
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "external"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "capable_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002292",
"lbl" : "expresses",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Inverse of 'expressed in'"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-6601-2165"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0015001",
"lbl" : "has exemplar data",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a material entity and some data in which the data is taken as exemplifying the material entity."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "transcriptomically defined cell type X equivalent to ‘cell’ and (has_exemplar_data value [transcriptomic profile data])"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "C has_exemplar_data y iff x is an instance of C and y is data about x that is taken as exemplifying of C."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-5260-9315"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "This relation is not meant to capture the relation between occurrents and data."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0015002",
"lbl" : "exemplar data of",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-5260-9315"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0015003",
"lbl" : "subcluster of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a group and another group it is part of but does not fully constitute."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "X subcluster_of Y iff: X and Y are clusters/groups; X != Y; all members of X are also members of Y."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0001-7258-9596"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "This is used specifically for sets whose members are specified by some set-forming operator (method of grouping) such as clustering analyses in single cell transcriptomics."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0015004",
"lbl" : "has characterizing marker set",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation that applies between a cell type and a set of markers that can be used to uniquely identify that cell type."
},
"synonyms" : [ {
"pred" : "hasExactSynonym",
"val" : "has marker gene combination"
}, {
"pred" : "hasExactSynonym",
"val" : "has marker signature set"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "'Lamp5-like Egln3_1 primary motor cortex GABAergic interneuron (Mus musculus)' subClass_of: has_characterizing_marker_set some 'NS forest marker set of Lamp5-like Egln3_1 MOp (Mouse).'; NS forest marker set of Lamp5-like Egln3_1 SubClass_of: ('has part' some 'Mouse Fbn2') and ('has part' some 'Mouse Chrna7') and ('has part' some 'Mouse Fam19a1')."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "transcriptomically defined cell type X subClass_of: (has_characterizing_marker_set some S1); S1 has_part some gene 1, S1 has_part some gene 2, S1 has_part some gene 3."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "C has_characterizing_marker_set y iff: C is a cell type and y is a collection of genes or proteins whose expression is sufficient to distinguish cell type C from most or all other cell types."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "This relation is not meant for cases where set of genes/proteins are only useful as markers in some specific context - e.g. in some specific location. In these cases it is recommended to make a more specific cell class restricted to the relevant context."
}, {
"pred" : "http://purl.org/dc/elements/1.1/contributor",
"val" : "https://orcid.org/0000-0001-7258-9596"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_HOM0000007",
"lbl" : "in historical homology relationship with",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Homology that is defined by common descent.",
"xrefs" : [ "http://dx.doi.org/10.1016/S0169-5347(97)01125-7", "http://purl.obolibrary.org/obo/HOM_0000007", "ISBN:0123195837" ]
},
"synonyms" : [ {
"pred" : "hasBroadSynonym",
"val" : "homology"
}, {
"pred" : "hasExactSynonym",
"val" : "cladistic homology"
}, {
"pred" : "hasExactSynonym",
"val" : "historical homologous to"
}, {
"pred" : "hasExactSynonym",
"val" : "phylogenetic homology"
}, {
"pred" : "hasExactSynonym",
"val" : "taxic homology"
}, {
"pred" : "hasRelatedSynonym",
"val" : "true homology"
} ],
"xrefs" : [ {
"val" : "ECO:0000080"
}, {
"val" : "RO_proposed_relation:homologous_to"
}, {
"val" : "SO:0000330"
}, {
"val" : "SO:0000853"
}, {
"val" : "SO:0000857"
}, {
"val" : "SO:homologous_to"
}, {
"val" : "TAO:homologous_to"
} ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/creator",
"val" : "http://bgee.unil.ch"
}, {
"pred" : "http://purl.org/dc/elements/1.1/source",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20116127"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://purl.obolibrary.org/obo/HOM_0000007"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/description",
"lbl" : "description",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/description"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-description"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/title",
"lbl" : "title",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/elements/1.1/title"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dc-title"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/license",
"lbl" : "license",
"type" : "PROPERTY",
"meta" : {
"xrefs" : [ {
"val" : "http://purl.org/dc/terms/license"
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
"val" : "uberon"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag",
"val" : "true"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "dcterms-license"
} ]
}
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref",
"lbl" : "database_cross_reference",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym",
"lbl" : "has_exact_synonym",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym",
"lbl" : "has_related_synonym",
"type" : "PROPERTY"
} ],
"edges" : [ {
"sub" : "http://purl.obolibrary.org/obo/RO_0015003",
"pred" : "subPropertyOf",
"obj" : "http://purl.obolibrary.org/obo/BFO_0000050"
}, {
"sub" : "http://purl.obolibrary.org/obo/BFO_0000050",
"pred" : "inverseOf",
"obj" : "http://purl.obolibrary.org/obo/BFO_0000051"
}, {
"sub" : "http://purl.obolibrary.org/obo/RO_0015001",
"pred" : "inverseOf",
"obj" : "http://purl.obolibrary.org/obo/RO_0015002"
} ],
"propertyChainAxioms" : [ {
"predicateId" : "http://purl.obolibrary.org/obo/RO_0002162",
"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002162" ]
}, {
"predicateId" : "http://purl.obolibrary.org/obo/RO_0002162",
"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002162" ]
}, {
"predicateId" : "http://purl.obolibrary.org/obo/RO_0002100",
"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002100", "http://purl.obolibrary.org/obo/BFO_0000050" ]
}, {
"predicateId" : "http://purl.obolibrary.org/obo/RO_0002162",
"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002162" ]
}, {
"predicateId" : "http://purl.obolibrary.org/obo/RO_0015001",
"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0015001", "http://purl.obolibrary.org/obo/RO_0015003" ]
} ]
} ]
}