setup.py

from setuptools import setup

def readme():
    with open("README.md") as f:
        return f.read()

setup(
    name="morpher",
    version="0.0.2",
    description="Modeling of Outcome and Risk Prediction in Health Research",
    long_description=readme(),
    classifiers=[
        "Development Status :: 3 - Alpha",
        "License :: OSI Approved :: MIT License",
        "Programming Language :: Python :: 3.6",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
    url="https://github.com/hpi-dhc/morpher-toolkit",
    author="Harry Freitas da Cruz",
    author_email="harrycruz@gmail.com",
    license="MIT",
    packages=["morpher", "morpher.jobs"],
    tests_require=["pytest"],
    setup_requires=["pytest-runner"],
    install_requires=[
        "markdown",
        "scikit-learn==0.20.3",
        "pandas==0.24.2",
        "numpy==1.16.2",
        "lime",
        "scipy==1.2.1",
        "matplotlib==3.1.1",
        "sklearn_pandas",
        "fancyimpute==0.4.2",
        "imbalanced-learn==0.4.3",
        "statsmodels",
        "jsonpickle==1.2",
        "jinja2",
        "pyhdb",
        "mpld3",
        "shap==0.34.0",
        "xgboost==1.0.1",
        "lightgbm==2.3.1",
        "simplejson",
        "skrebate",
        "joblib",
        "Boruta",
        "catboost",
    ],
    # specifying a given version: 'chardet==3.0.4',
    zip_safe=False,
)