Interrupted when executing bio test
#33
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$ bio test
# Running 57 tests:
86%|██████████████████████████████████████████████████████████████████████████████████████████████████████▎| 49/57 [00:14<00:01, 5.80it/s]
running: bio search SRR1972976 > search_srr.json
---
+++
@@ -6,6 +6,7 @@
"sample_description": "Zaire ebolavirus genome sequencing from 2014 outbreak in Sierra Leone",
"first_public": "2015-06-05",
"country": "Sierra Leone",
+ "tax_id": "186538",
"scientific_name": "Zaire ebolavirus",
"fastq_bytes": "699204879;605646780",
"base_count": "1685747974",
(cd /home/tully/micromamba/envs/bioinfo/lib/python3.8/site-packages/biorun/data && bio search SRR1972976 > search_srr.json)
86%|██████████████████████████████████████████████████████████████████████████████████████████████████████▎| 49/57 [00:16<00:02, 2.93it/s] |
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Answered by
ialbert
Nov 21, 2023
Replies: 1 comment
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the remote sites sometimes change their data, so now it does not match the local, there is no easy way around getting this problem, here it seems that the JSON now includes the taxid, when previously it did not you can run the command shown below to update your data to this output |
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Answer selected by
TullyMonster
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the remote sites sometimes change their data, so now it does not match the local,
there is no easy way around getting this problem, here it seems that the JSON now includes the taxid, when previously it did not
you can run the command shown below to update your data to this output