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.travis.yml
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.travis.yml
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language: generic
dist: xenial
cache:
pip: true
addons:
apt:
packages:
- libxkbcommon-x11-0
env:
# TRAVIS_PYTHON_VERSION is only needed for neo's setup.py
# OPENBLAS_NUM_THREADS=1 avoid slowdowns:
# https://github.com/xianyi/OpenBLAS/issues/731
global: PYTHON_VERSION=3.7 DISPLAY=:99.0 MNE_LOGGING_LEVEL=warning
TRAVIS_PYTHON_VERSION=3.7 CONDA_VERSION=">=4.3.27"
OPENBLAS_NUM_THREADS=1
matrix:
include:
# Linux
- os: linux
env: CONDA_ENV="environment.yml"
# OSX conda
- os: osx
env: CONDA_ENV="environment.yml"
# PIP + non-default stim channel
- os: linux
env: MNE_STIM_CHANNEL=STI101
language: python
python: "3.7"
# Old dependencies
- os: linux
env: PYTHON_VERSION=3.5
CONDA_DEPENDENCIES="numpy=1.12 scipy=0.18 matplotlib=2.0 pandas=0.19 scikit-learn=0.18"
CONDA_CHANNELS="conda-forge"
# Minimal (runs with and without testing data)
- os: linux
env: DEPS=minimial
CONDA_DEPENDENCIES="numpy scipy matplotlib"
MNE_DONTWRITE_HOME=true MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TEST=1
# Setup anaconda
before_install:
- if [ "${TRAVIS_OS_NAME}" == "linux" ]; then
/sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -screen 0 1400x900x24 -ac +extension GLX +render -noreset;
fi;
- if [ -z "$CONDA_ENV" ] && [ -z "$CONDA_DEPENDENCIES" ]; then
pip uninstall -yq numpy;
pip install -f "https://7933911d6844c6c53a7d-47bd50c35cd79bd838daf386af554a83.ssl.cf2.rackcdn.com" --pre numpy scipy;
pip install vtk;
pip install $PIP_DEPENDENCIES;
pip install --upgrade -r requirements.txt;
else
git clone https://github.com/astropy/ci-helpers.git;
source ci-helpers/travis/setup_conda.sh;
if [ ! -z "$CONDA_ENV" ]; then
conda activate base;
conda env update --file $CONDA_ENV;
pip uninstall -yq mne;
if [ "${TRAVIS_OS_NAME}" == "osx" ]; then
pip install "pyqt5>=5.10,!=5.14.1";
fi;
fi;
fi
# Always install these via pip so we get the latest possible versions (testing bugfixes)
- pip install --upgrade pytest pytest-sugar pytest-cov pytest-mock pytest-timeout codecov
- if [ "${DEPS}" != "minimal" ]; then
pip install nitime;
fi
# Don't source mne_setup_sh here because changing PATH etc. can't be done in a script
- if [ "${DEPS}" != "minimal" ]; then
export MNE_ROOT="${PWD}/minimal_cmds";
export PATH=${MNE_ROOT}/bin:$PATH;
if [ "${TRAVIS_OS_NAME}" == "linux" ]; then
curl https://staff.washington.edu/larsoner/minimal_cmds.tar.gz | tar xz;
export LD_LIBRARY_PATH=${MNE_ROOT}/lib:$LD_LIBRARY_PATH;
export NEUROMAG2FT_ROOT="${PWD}/minimal_cmds/bin";
else
curl https://staff.washington.edu/larsoner/minimal_cmds_osx.tar.gz | tar xz;
export DYLD_LIBRARY_PATH=${MNE_ROOT}/lib:$DYLD_LIBRARY_PATH;
fi;
mne_surf2bem --version;
fi;
install:
# Rvm overrides cd with a function so that it can hook into it to run
# some scripts, see https://github.com/travis-ci/travis-ci/issues/8703
- if [ "${TRAVIS_OS_NAME}" == "osx" ]; then
unset -f cd;
fi;
# Suppress the parallel outputs for logging cleanliness
- python setup.py build
- python setup.py install
- mne sys_info
- SRC_DIR=$(pwd)
- cd ~
# Trigger download of testing data. Note that
# the testing dataset has been constructed to contain the necessary
# files to act as a FREESURFER_HOME for the coreg tests
- if [ "${DEPS}" != "minimal" ]; then
python -c 'import mne; mne.datasets.testing.data_path(verbose=True)';
fi;
- if [ "${DEPS}" != "minimal" ] && [ "${TRAVIS_OS_NAME}" == "linux" ]; then
export FREESURFER_HOME=$(python -c 'import mne; print(mne.datasets.testing.data_path())');
export MNE_SKIP_FS_FLASH_CALL=1;
fi;
- cd ${SRC_DIR}
script:
- echo "Print locale "
- locale
- echo "Other stuff"
# OSX runs ~2x slower than Linux on Travis, so skip any slow ones there
- if [ "${TRAVIS_OS_NAME}" == "osx" ]; then
CONDITION='not slowtest';
else
CONDITION='not ultraslowtest';
fi;
# Determine directories to test (could use SPLIT=0 SPLIT=1 but currently
# we are fast enough, so disable it)
- if [ -z ${SPLIT} ]; then
USE_DIRS="mne/";
else
if [ "${SPLIT}" == "0" ]; then
MNE_DIRS=". beamformer channels commands connectivity datasets decoding forward gui inverse_sparse io";
elif [ "${SPLIT}" == "1" ]; then
MNE_DIRS="minimum_norm preprocessing realtime simulation stats time_frequency viz";
elif [ "${SPLIT}" == "2" ]; then
MNE_DIRS=".";
else
MNE_DIRS="beamformer channels commands connectivity datasets decoding forward gui inverse_sparse io";
fi;
USE_DIRS="";
for DIR in ${MNE_DIRS}; do
if [ "${DIR}" == "." ]; then
USE_DIRS="mne/tests mne/*.py ${USE_DIRS}";
else
USE_DIRS="mne/${DIR}/ ${USE_DIRS}";
fi;
done;
fi;
# Test run_tests_if_main
- if [ "${DEPS}" == "minimal" ]; then
pip uninstall -yq mne;
pip install -e .;
python mne/tests/test_evoked.py;
fi;
- echo pytest -m "${CONDITION}" --cov=mne ${USE_DIRS}
- pytest -m "${CONDITION}" --tb=short --cov=mne ${USE_DIRS}
# run the minimal one with the testing data
- if [ "${DEPS}" == "minimal" ]; then
export MNE_SKIP_TESTING_DATASET_TESTS=false;
python -c 'import mne; mne.datasets.testing.data_path(verbose=True)';
fi;
- if [ "${DEPS}" == "minimal" ]; then
pytest -m "${CONDITION}" --tb=short --cov=mne ${USE_DIRS};
fi;
after_script:
# Need to run from source dir to exectue "git" commands
- cd ${SRC_DIR};
- codecov;