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cutlass 1.0.4
* Configuration for editorconfig.
* Configuration for pylint.
* Docstrings for generate_pass.py
- Victor <[email protected]> Sun, 17 Feb 2019 16:00:00 -0400
cutlass 1.0.3
* Support for preg_term and ga_at_delivery fields in SubjectAttribute.
- Victor <[email protected]> Wed, 21 Feb 2018 16:00:00 -0400
cutlass 1.0.2
* Support for subproject in VisitAttribute, SubjectAttribute and
sampleAttribute classes.
* Support for sample_desc and sample_type properties in the
SampleAttribute class.
* Support for the int_sample_id property in the Sample class.
* Some linting issues corrected per pylint.
- Victor <[email protected]> Sat, 17 Feb 2018 16:00:00 -0400
cutlass 1.0.1
* Support for mother_child, and time_during_pregnancy properties
in VisitAttribute.
* Minor pylint issues correct with VisitAttribute class.
- Victor <[email protected]> Fri, 26 Jan 2018 17:00:00 -0400
cutlass 1.0.0
* Added serology, host_epigenetics_raw_seq_set and host_variant_call nodes,
tests, and examples.
* Removed obsolete rand_generator function from some files.
* Addressed many linting issues identified by pylint.
* Numerous documentation/pydoc improvements
- Victor <[email protected]> Mon, 18 Dec 2017 17:00:00 -0400
cutlass 0.30
* Support for the ProteomeNonPride node type.
* Numerous formatting and other changes identified by pylint corrected.
* Merged PR #29 from @carze fixing the handling of optional properties
in the VisitAttribute class.
* Some pyunit test scripts improved to reduce code duplication with use of
testing utilities.
- Victor <[email protected]> Mon, 11 Sep 2017 10:00:00 -0400
cutlass 0.29
* Added missing support for private data in several classes and added
associated changes to examples and test scripts.
* Negative size check for AbundanceMatrix.
- Victor <[email protected]> Thu, 02 Mar 2017 10:30:00 -0400
cutlass 0.28
* Added support for private data in nodes associated with files and file
transfer, such as WgsRawSeqSet.
* Missing example script for WgsRawSeqSet added.
* Missing test script for HostTranscriptomicsRawSeqSet added.
* New method for testing boolean properties in CutlassTestUtil class.
- Victor <[email protected]> Thu, 26 Jan 2017 15:30:00 -0400
cutlass 0.27
* Bug fix to SixteenSTrimmedSeqSet save() functionality which
was losing the urls property.
* Improved test for SixteenSTrimmedSeqSet class.
* Added missing example script for SixteenSTrimmedSeqSet data.
- Victor <[email protected]> Tue, 17 Jan 2017 15:00:00 -0400
cutlass 0.26
* Added missing SubjectAttribute node, example and test.
* Modified Subject node to add attributes() method for retrieval
of SubjectAttribute information.
* Modified Annotation class to require file size.
* Removed WgsRawSeqSetPrivate class, test and example in favor
of more generic solution.
* Improved flexibility of test scripts by using a configuration
file for OSDF settings.
- Victor <[email protected]> Fri, 29 Nov 2016 15:00:00 -0400
cutlass 0.25
* Removed some code duplication in Metabolome identified
after an unrelated issue reported by @salinsde.
- Victor <[email protected]> Tue, 25 Oct 2016 11:00:00 -0400
cutlass 0.24
* Fixed wrong class name.
* Fixed problems with node load identified by @arjun0127.
- Victor <[email protected]> Tue, 18 Oct 2016 11:35:00 -0400
cutlass 0.23
* Added support for the new WgsRawSeqSetPrivate node.
* Fixed issue with child retrieval in MicrobiomeAssayPrep.
* Added child retrieval functionality to WgsAssembledSeqSet.
- Victor <[email protected]> Mon, 10 Oct 2016 15:50:00 -0400
cutlass 0.22
* Removed length check on comment properties in some classes as we're
deferring to OSDF for that.
* Added support for the HostWgsRawSeqSet node, which was previously missing.
* Added proteome retrieval support contributed by @akumar.
* Added better support for retrieving dependent nodes in the Sample class.
- Victor <[email protected]> Tue, 04 Oct 2016 15:30:00 -0400
cutlass 0.21
* Change to exception message related to linkages of
MicrobTranscriptomicsRawSeqSet nodes reported by @cometsong.
* Aspera version check fixed to cope with older version of ascp
reported by @parikhhi.
- Victor <[email protected]> Mon, 19 Sep 2016 14:00:00 -0400
cutlass 0.20
* Changes to Sample by @cometsong to fix name attribute.
* Fixed problem identified by @parikhhi with Sample links.
- Victor <[email protected]> Thu, 01 Sep 2016 17:00:00 -0400
cutlass 0.19.1
* Fixed issued with the name of a load method.
- Victor <[email protected]> Wed, 22 Jun 2016 12:00:00 -0400
cutlass 0.19
* Closed CUTLASS-3 problem with searches reported by @comentsong.
* Also addressed search() method for the other classes.
* Fixed minor issue with test_aspera.py unit test and moved round-trip test
script to tests/bin subdirectory to avoid conflict with unittest module and
test discovery.
- Victor <[email protected]> Tue, 14 Jun 2016 12:00:00 -0400
cutlass 0.18
* Added support for Cytokine data with the Cytokine class and associated test
and example scripts.
* Added support for HostSeqSet, HostTranscriptomicsRawSeqSet,
MicrobTranscriptomicsSeqSet, Lipidome,
Metabolome, ClusteredSeqSet, ViralSeqSet data with the classes and
associated tests and example scripts.
* Added metabolomes(), lipidomes(), cytokines() and children() support for
HostAssayPrep and MicrobiomeAssayPrep classes.
* Some logging improvements.
- Victor <[email protected]> Wed, 08 Jun 2016 12:00:00 -0400
cutlass 0.17
* Added additional classes, including VisitAttribute and helper
DiseaseMeta class.
- Victor <[email protected]> Fri, 27 May 2016 12:00:00 -0400
cutlass 0.16
* Issue with exception handling in aspera class.
* Additional decorators used for typechecking.
* Fixed issue with AbundanceMatrix not accepting local file for
upload.
- Victor <[email protected]> Fri, 13 May 2016 12:00:00 -0400
cutlass 0.15
* Made date optional in the Visit class.
* sampleAttributes() to return iterator in Sample.
* Fixed broken decorator in iHMPSession.
- Victor <[email protected]> Thu, 21 Apr 2016 12:00:00 -0400
cutlass 0.14
* Added python version check.
* Using ascp exit value to check for aspera transfer success.
* Fixed Annotation save() and local file upload.
* New decorator for date checking.
- Victor <[email protected]> Thu, 21 Apr 2016 12:00:00 -0400
cutlass 0.13
* New class for AbundanceMatrix and new tests.
* Corrections to method documentation.
* Using decorators for type checking.
- Victor <[email protected]> Tue, 12 Apr 2016 12:00:00 -0400
cutlass 0.12
* Added several new classes, including WgsAssembledSeqSet,
Proteome, HostAssayPrep, and MicrobiomeAssayPrep.
* Added several new example scripts for the new objects.
* Improved type checking of the linkages in the base class.
- Victor <[email protected]> Mon, 22 Feb 2016 12:00:00 -0400
cutlass 0.11
* Ensuring dates specified on the Visit class do not happen in the
future.
- Victor <[email protected]> Sun, 14 Feb 2016 12:00:00 -0400
cutlass 0.10
* Sample supports optional name property.
* Update to test for the Sample class.
- Victor <[email protected]> Wed, 10 Feb 2016 12:00:00 -0400
cutlass 0.9
* Some documentation fixes.
* Subtype fixes to 16S related classes contributed by
@jonathancrabtree.
- Victor <[email protected]> Mon, 30 Nov 2015 12:00:00 -0400
cutlass 0.8.1
* Cherry picked code from PR #20 contributed by [email protected]
for improved logging in various areas.
- Victor <[email protected]> Wed, 25 Nov 2015 12:00:00 -0400
cutlass 0.8
* Cherry picked code from PR #21 contributed by [email protected]
to provice a children() method to more easily retrieve child nodes.
* Added new subtype field common to all classes for easier aggregated
queries.
* Study class has a mandatory subtype with controlled vocabulary, other
classes have a static value, or one inferred from the class name
or other metadata.
* Updates to wording of documentation in various places.
- Victor <[email protected]> Wed, 25 Nov 2015 12:00:00 -0400
cutlass 0.7
* Corrections to logging statements. Merged pull request #18.
Contributed by [email protected].
- Victor <[email protected]> Sat, 21 Nov 2015 12:00:00 -0400
cutlass 0.6
* Added convenience methods to make objects hashable, equal-able.
Contributed by [email protected].
- Victor <[email protected]> Thu, l9 Nov 2015 12:00:00 -0400
cutlass 0.5
* Fixed requirement for both 'part_of' and 'subset_of' linkages
in the Study class.
- Victor <[email protected]> Thu, l2 Nov 2015 12:00:00 -0400
cutlass 0.4
* Added convenience methods for several classes to easy retrieval
of linked objects. Contributed by [email protected].
- Victor <[email protected]> Fri, 06 Nov 2015 10:00:00 -0400
cutlass 0.3
* Altered server-side upload/download paths for certain node
types to conform with updated tree structure/storage.
* Added missing create_wgs_raw_seq_set() method in the iHMPSession
class.
- Victor <[email protected]> Mon, 14 Sep 2015 12:00:00 -0400
cutlass 0.2
* Merged pull request providing search() implementation for each
node type.
- Victor <[email protected]> Sat, 30 Aug 2015 12:00:00 -0400
cutlass 0.1
* Added pydoc documentation for the various classes
* Added more unit tests
* Formatting improvements to the code
- Victor <[email protected]> Wed, 12 Aug 2015 18:00:00 -0400
cutlass 0.0.2
* Added missing LICENSE file.
- Victor <[email protected]> Mon, 10 Aug 2015 15:30:00 -0400
osdf-python 0.0.1
* Initial release
- Victor <[email protected]> Thu, 25 Jun 2015 12:00:00 -0400