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datasets.php
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<?php
require __DIR__ . "/../../config/bootstrap.php";
redirectOutside();
//Retrive communities
$communities = getCommunities();
// Print page
?>
<?php require "../htmlib/header.inc.php"; ?>
<body class="page-header-fixed page-sidebar-closed-hide-logo page-content-white page-container-bg-solid page-sidebar-fixed">
<div class="page-wrapper">
<?php require "../htmlib/top.inc.php"; ?>
<?php require "../htmlib/menu.inc.php"; ?>
<!-- BEGIN CONTENT -->
<div class="page-content-wrapper">
<!-- BEGIN CONTENT BODY -->
<div class="page-content">
<!-- BEGIN PAGE HEADER-->
<!-- BEGIN PAGE BAR -->
<div class="page-bar">
<ul class="page-breadcrumb">
<li>
<a href="home/">Home</a>
<i class="fa fa-circle"></i>
</li>
<li>
<span>Get Data</span>
<i class="fa fa-circle"></i>
</li>
<li>
<span>From Repository</span>
<i class="fa fa-circle"></i>
</li>
<li>
<span>Repository Name</span>
</li>
</ul>
</div>
<!-- END PAGE BAR -->
<!-- BEGIN PAGE TITLE-->
<h1 class="page-title">
<a href="javascript:;" target="_blank"><img src="assets/layouts/layout/img/icon.png" width=100></a>
My Datasets
</h1>
<!-- END PAGE TITLE-->
<!-- END PAGE HEADER-->
<?php
// inject error Message
$_SESSION['errorData']['Info'][]="Data catalogue under construction";
// print PHP ERROR MESSAGES
if (isset($_SESSION['errorData'])) {
foreach ($_SESSION['errorData'] as $subTitle => $txts){
if (count($txts) == 0){
unset($_SESSION['errorData'][$subTitle]);
}
}
}
if (isset($_SESSION['errorData']) && $_SESSION['errorData']) {
if (isset($_SESSION['errorData']['Info'])) {
?><div class="alert alert-info"><?php
} else {
?><div class="alert alert-warning"><?php
}
foreach ($_SESSION['errorData'] as $subTitle => $txts) {
print "$subTitle<br/>";
foreach ($txts as $txt) {
print "<div style=\"margin-left:20px;\">$txt</div>";
}
}
unset($_SESSION['errorData']);
?></div><?php
}
?>
<div class="row">
<div class="col-md-12">
<!-- BEGIN EXAMPLE TABLE PORTLET-->
<div class="portlet light portlet-fit bordered">
<div class="portlet-title">
<div class="caption">
<i class="icon-share font-red-sunglo hide"></i>
<span class="caption-subject font-dark bold uppercase">Browse Datasets</span>
</div>
</div>
<div class="portlet-body">
<div id="loading-datatable">
<div id="loading-spinner">LOADING</div>
</div>
<table class="table table-striped table-hover table-bordered" id="table-repository">
<thead>
<tr>
<th> Id </th>
<th> Title </th>
<th> Description </th>
<th> Version </th>
<th> Type </th>
<th> Study </th>
<th> Access credentials </th>
<th> Import </th>
</tr>
</thead>
<tbody>
<!-- process and display each result row -->
<?php
$ds_list = getDatasets();
//JL DEMO
$ds_list = True;
if ($ds_list){
$datasets=[
['_id'=>'EGAD0001000309',
'name'=> 'UK10K_OBESITY_GS REL-2012-11-27',
'description' => '',
'version' => '',
'datatype' => 'Exome Seq',
'study' => 'UK10K_OBESITY_GS',
'access' => 'pending'
]];
// foreach (getDatasets() as $obj) {
foreach ($datasets as $obj) {
if($obj['type'] != "participant") {
?>
<tr>
<td> <?php echo $obj["_id"]; ?> </td>
<td> <?php echo $obj["name"]; ?> </td>
<td> <?php echo $obj["description"]; ?> </td>
<td> <?php echo $obj["version"]; ?> </td>
<td> <?php echo $obj["datatype"]; ?> </td>
<td> <?php echo $obj["study"]; ?> </td>
<td> <?php echo $obj['access']; ?> </td>
<td style="vertical-align:middle;">
<?php
$dataset_uri = ($obj->datalink->uri? $obj->datalink->uri:"");
?>
<!-- Send via GET url and metadata to getData.php // CURRENTLY DONE VIA POST-->
<?php
/*
$GET_metadata = http_build_query(array(
"uploadType" => "repository",
"url" => $dataset_uri,
"data_type" => "metrics_reference",
"description" => $obj->description,
"oeb_dataset_id" => $obj->_id,
"oeb_community_ids"=> (array) $obj->community_ids
));
*/
?>
<!-- <a <?php //if(!$dataset_uri){echo 'class="disabled" style="opacity: 0.4;"';}?> href="applib/getData.php?<?php //echo $GET_metadata; ?>">
<i class="font-green fa fa-download tooltips disabled" aria-hidden="true" style="font-size:22px;" data-container="body" data-html="true" data-placement="right" data-original-title="<p align='left' style='margin:0'>Import dataset to workspace</p>"></i></a> -->
<!-- Send via POST url and metadata to getData.php -->
<form action="applib/getData.php" method="post">
<input type="hidden" name="uploadType" value="repository"/>
<input type="hidden" name="url" value="<?php echo htmlspecialchars($dataset_uri);?>" />
<input type="hidden" name="data_type" value="<?php echo htmlspecialchars($obj->type);?>"/>
<input type="hidden" name="description" value="<?php echo htmlspecialchars($obj->description);?>"/>
<input type="hidden" name="oeb_dataset_id" value="<?php echo htmlspecialchars($obj->_id);?>" />
<?php foreach((array)$obj->community_ids as $community_id){ ?>
<input type="hidden" name="oeb_community_ids[]" value="<?php echo htmlspecialchars($community_id);?>" />
<?php } ?>
<button type="submit" class="btn green dropdown-toggle" value="submit">
<i class="fa fa-download tooltips font-white" data-original-title="Import dataset to workspace"></i>
</button>
</form>
</td>
</tr>
<?php }
}} ?>
</tbody>
</table>
</div>
</div>
<!-- END EXAMPLE TABLE PORTLET-->
</div>
</div>
</div>
<!-- END CONTENT BODY -->
</div>
<!-- END CONTENT -->
<?php
require "../htmlib/footer.inc.php";
require "../htmlib/js.inc.php";
?>