Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

can the unaligned read files requirement be waived? #40

Open
e-manduchi opened this issue May 20, 2015 · 0 comments
Open

can the unaligned read files requirement be waived? #40

e-manduchi opened this issue May 20, 2015 · 0 comments

Comments

@e-manduchi
Copy link

I understand that the requirement to provide the sequence read files is because they are used for 2 things: mapping stats and building the BLAST database. I wonder if it's possible to have an option to waive this requirement when one wants to run PORT without the BLAST step (i.e. proviidng the rRNA filtered beforehand). Couldn't the mapping stats be calculated from the sam files, assuming these contain all reads?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@e-manduchi