A repository of Chef cookbooks useful for setting up bioinformatics analysis machines. Currently, the focus is on 64bit Ubuntu images, since that is what we use, but the recipes should
Find herein:
- sequence analysis tools
- BLAT
- BWA
- Bowtie
- samtools
- NCBI tools
- open source proteomics algorithms
- X!Tandem
- OMSSA
- TPP
- R
- BioRuby
- BioPerl
- Supporting services
- apache
- mysql
- redis
- ...