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Programs
jbjorne edited this page Jul 17, 2012
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| Program | Location | Description |
|---|---|---|
| batch.py | Batch process a tree of input files | |
| classify.py | Predict events/relations | |
| configure.py | Configure TEES | |
| train.py | Train a new event/relation extraction model | |
| ExampleBuilder.py | ExampleBuilders | Build machine learning examples from interaction XML |
| BioNLP11GeniaTools.py | Evaluators | Evaluate BioNLP Shared Task predictions |
| Evaluator.py | Evaluators | Calculate f-score and other statistics |
| BioTextExampleWriter.py | ExampleWriters | Write predicted examples to interaction XML |
| SVMMultiClassClassifier.py | Classifiers | Joachims SVM Multiclass classifier wrapper |
| SVMMultiClassModelUtils.py | Classifiers | Joachims SVM Multiclass model file processing |
| BANNER.py | Tools | BANNER named entity recognizer wrapper |
| BLLIPParser.py | Tools | BLLIP parser wrapper |
| GeniaEventsToSharedTask.py | Tools | |
| GeniaSentenceSplitter.py | Tools | GENIA Sentence Splitter wrapper |
| GeniaTagger.py | Tools | |
| SentenceSplitter.py | Tools | For inserting an existing sentence splitting |
| StanfordParser.py | Tools | Stanford Parser dependency converter wrapper |
| Preprocessor.py | Detectors | A tool chain for making interaction XML, sentence splitting, NER and parsing |
| CompareExamples.py | Utils | Analyze SVM example files |
| CompareFeatures.py | Utils | Analyze SVM example files |
| DetectHeads.py | Utils | Recalculate head token offsets |
| FindHeads.py | Utils | Recalculate head token offsets |
| Release.py | Utils | Make TEES release files |
| Analyze.py | Utils/STFormat | ST format statistics |
| Compare.py | Utils/STFormat | Compare event distribution |
| ConvertXML.py | Utils/STFormat | Conversion between BioNLP ST format and Interaction XML |
| Equiv.py | Utils/STFormat | Resolve annotated equivalences |
| RoundTrip.py | Utils/STFormat | Convert ST format to interaction XML and back |
| STTools.py | Utils/STFormat | ST format input and output |
| Scores.py | Utils/STFormat | Analyze confidence scores |
| Validate.py | Utils/STFormat | Validate BioNLP'11 event constraints |
| DDITools.py | Utils/Convert | Tools for the DDI'11 Shared Task |
| SubtiWiki.py | Utils/Convert | Extract information from SubtiWiki for the BioNLP'11 REN task |
| convertBioNLP.py | Utils/Convert | BioNLP'11 Shared Task corpus conversion |
| convertDDI.py | Utils/Convert | DDI'11 Shared Task corpus conversion |