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Programs
jbjorne edited this page Jul 17, 2012
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| Program | Location | Description |
|---|---|---|
| batch.py | Batch process a tree of input files | |
| classify.py | Predict events/relations | |
| configure.py | Configure TEES | |
| train.py | Train a new event/relation extraction model | |
| ExampleBuilders | ExampleBuilder.py | Build machine learning examples from interaction XML |
| Evaluators | BioNLP11GeniaTools.py | Evaluate BioNLP Shared Task predictions |
| Evaluators | Evaluator.py | Calculate f-score and other statistics |
| ExampleWriters | BioTextExampleWriter.py | Write predicted examples to interaction XML |
| Classifiers | SVMMultiClassClassifier.py | Joachims SVM Multiclass classifier wrapper |
| Classifiers | SVMMultiClassModelUtils.py | Joachims SVM Multiclass model file processing |
| Tools | BANNER.py | BANNER named entity recognizer wrapper |
| Tools | BLLIPParser.py | BLLIP parser wrapper |
| Tools | GeniaEventsToSharedTask.py | |
| Tools | GeniaSentenceSplitter.py | GENIA Sentence Splitter wrapper |
| Tools | GeniaTagger.py | |
| Tools | SentenceSplitter.py | For inserting an existing sentence splitting |
| Tools | StanfordParser.py | Stanford Parser dependency converter wrapper |
| Detectors | Preprocessor.py | A tool chain for making interaction XML, sentence splitting, NER and parsing |
| Utils | CompareExamples.py | Analyze SVM example files |
| Utils | CompareFeatures.py | Analyze SVM example files |
| Utils | DetectHeads.py | Recalculate head token offsets |
| Utils | FindHeads.py | Recalculate head token offsets |
| Utils | Release.py | Make TEES release files |
| Utils/STFormat | Analyze.py | ST format statistics |
| Utils/STFormat | Compare.py | Compare event distribution |
| Utils/STFormat | ConvertXML.py | Conversion between BioNLP ST format and Interaction XML |
| Utils/STFormat | Equiv.py | Resolve annotated equivalences |
| Utils/STFormat | RoundTrip.py | Convert ST format to interaction XML and back |
| Utils/STFormat | STTools.py | ST format input and output |
| Utils/STFormat | Scores.py | Analyze confidence scores |
| Utils/STFormat | Validate.py | Validate BioNLP'11 event constraints |
| Utils/Convert | DDITools.py | Tools for the DDI'11 Shared Task |
| Utils/Convert | SubtiWiki.py | Extract information from SubtiWiki for the BioNLP'11 REN task |
| Utils/Convert | convertBioNLP.py | BioNLP'11 Shared Task corpus conversion |
| Utils/Convert | convertDDI.py | DDI'11 Shared Task corpus conversion |