From 7d5a310fe0825d55a02378179b3d4b0907ca0e20 Mon Sep 17 00:00:00 2001
From: jbloom <jbloom@fredhutch.org>
Date: Tue, 6 Feb 2024 15:44:01 -0800
Subject: [PATCH] test via GitHub actions, not Travis

---
 .github/workflows/test.yaml | 35 +++++++++++++++++++++++++++++++++++
 .gitignore                  |  1 +
 CHANGELOG.rst               |  1 +
 README.rst                  |  4 ++--
 4 files changed, 39 insertions(+), 2 deletions(-)
 create mode 100644 .github/workflows/test.yaml

diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
new file mode 100644
index 0000000..22a0996
--- /dev/null
+++ b/.github/workflows/test.yaml
@@ -0,0 +1,35 @@
+name: Run tests
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  test:
+    name: Run tests
+    runs-on: ubuntu-latest
+    timeout-minutes: 60
+    steps:
+      - name: checkout
+        uses: actions/checkout@v4
+
+      - name: install python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+
+      - name: install package and dependencies
+        run: pip install -e . && pip install -r test_requirements.txt
+
+      - name: lint code with ruff
+        run: ruff check .
+
+      - name: check code format with black
+        run: black --check .
+
+      - name: test code with `pytest`
+        run: pytest
diff --git a/.gitignore b/.gitignore
index ea17540..ad657ff 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,6 +4,7 @@
 _*
 
 !.gitignore
+!.github
 !.travis.yml
 !.flake8
 !.nojekyll
diff --git a/CHANGELOG.rst b/CHANGELOG.rst
index 4d3af20..24ceefe 100644
--- a/CHANGELOG.rst
+++ b/CHANGELOG.rst
@@ -13,6 +13,7 @@ The format is based on `Keep a Changelog <https://keepachangelog.com>`_.
 - Lint with ``ruff`` rather than ``flake8``
 - Add ``pyarrow`` as dependency as required by ``pandas``.
 - Tweaks to work with new versions of ``pandas`` and ``plotnine``
+- Test with GitHub Actions rather than Travis CI
 
 1.4.3
 -----
diff --git a/README.rst b/README.rst
index 48f9410..fac7c3b 100644
--- a/README.rst
+++ b/README.rst
@@ -5,8 +5,8 @@ dms_variants
 .. image:: https://img.shields.io/pypi/v/dms_variants.svg
         :target: https://pypi.python.org/pypi/dms_variants
 
-.. image:: https://app.travis-ci.com/jbloomlab/dms_variants.svg
-        :target: https://app.travis-ci.com/github/jbloomlab/dms_variants
+.. image:: https://github.com/jbloomlab/dms_variants/actions/workflows/test.yaml/badge.svg
+        :target: https://github.com/jbloomlab/dms_variants/actions/workflows/test.yaml
 
 .. image:: https://img.shields.io/badge/code%20style-black-000000.svg
         :target: https://github.com/psf/black