Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

order BTA by interesting-ness - order by (un-harmonized taxonomic names) level of disagreements #6

Open
jhpoelen opened this issue Apr 18, 2023 · 4 comments

Comments

@jhpoelen
Copy link
Owner

when using BTA, I'd like to understand which taxonomic concepts are "interesting", where an interesting taxonomic concept is one in which interpretation varies across taxonomic authorities.

E.g.,

taxonomicId name authority
BTA:895@eb557c6d Neoromicia - see robertsi name_HMW
BTA:895@eb557c6d Laephotis - see capensis name_batnames
BTA:895@eb557c6d ** name_ALC
BTA:895@eb557c6d ** name_GBIF
BTA:895@eb557c6d Laephotis - see capensis name MDD
BTA:895@eb557c6d Neoromicia melckorum name_MSW4

For this example, we see that only MSW and IUCN agree.

We'd like to quantify this degree of agreeness.

Aja's idea is to list all permutations of authority pairs (e.g., MSW vs IUCN, MSW vs HMW) and score them with a 0 if they agree, and 1 if they disagree.

Now, a agreement index can be generated by:

agreeness index = sum (disagreements ) / total comparison

Absolute difference in interpretation across all different authorities.

In our example above, the score / distance (need to find a corresponding existing measure name) would be:

comparison table:

name_HMW vs

@jhpoelen
Copy link
Owner Author

see attached screenshot and XLSX for "paper" prototype for agreement index

aja-agreement-index.xlsx

image

@jhpoelen
Copy link
Owner Author

Idea is to compare agreement index curves to compare agreement spectrum across authorities or even within different versions of authorities.

image

@jhpoelen
Copy link
Owner Author

So, we'd like to take the combinations across the name authorities (e.g., name MDD, name_batnames) for each BTA concept.

@jhpoelen
Copy link
Owner Author

jhpoelen commented Apr 19, 2023

See also https://jhpoelen.nl/bat-taxonomic-alignment and screenshots below.

image

Screenshot from 2023-04-19 14-44-40
Screenshot from 2023-04-19 14-42-44
Screenshot from 2023-04-19 14-42-01

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant