Refactor Debug module

[blcham]

Debug module was merged by #293.

Goal of this issue is to resolve remaining issues related to the merge:

• Create s-pipes-debug tutorial in ROOT/s-pipes-debug/doc folder #316 (@MSattrtand )
• Unify dependencies within s-pipes-debug module #317
• configure some meaningful logging in s-pipes-debug (now there are too much logging when service starts)
• configure health check in s-pipes-debug module #321
• swagger ui does not work in s-pipes-debug module #320
• modify s-pipes-model.ttl file to generate model compatible with source code in progress listeners
  • currently it is not generated
  • there are many issues related mainly with cardinalities
  • it should be generated by s-pipes-model/pom.xml using mvn jopa:owl2java-transform
  • moreover the model should be hierarchical
  • after refactoring the correctness should be tested on the hands-on-tutorial
  • SUGGESTED STEPS TO DO IT:
    • generate and commit all files related to dataset-descriptor.ttl as they do not need to change
    • next steps:
      • A) modify s-pipes-model.ttl
      • B) in s-pipes-model run mvn jopa:owl2java-transform + mvn install
      • C) in s-pipes-core run mvn compile to find out issues
• cleanup (i.e. remove or refactor) Dockerfile-s, docker-compose files that does not make sense in ROOT/s-pipes-debug ... maybe we could even move ROOT/Dockerfile-debug to ROOT/s-pipes-debug if Fix failing release build in jenkins #312 is resolved

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Relevant pictures:

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ModelExecution and PipelineExecution should extend Transformation:

• they should be done using inheritence
• the model should be generated from ontology