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taxonomy files for common 16S datasets? #52

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faylward opened this issue Apr 2, 2024 · 0 comments
Open

taxonomy files for common 16S datasets? #52

faylward opened this issue Apr 2, 2024 · 0 comments
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faylward commented Apr 2, 2024 •
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Thank you for creating this tool - it is extremely useful!
I have been using some of the Kraken2 16S databases that are pre-compiled (RDP, SILVA, etc), and unfortunately these outputs are not compatible with recentrifuge because they do not use the NCBI taxonomy. Do you have any suggestions for using recentrifuge with analyses that have been done on 16S reference databases?
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