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✨ D3B-674 add new CAVATICA gf fields #697

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merged 1 commit into from
Sep 10, 2024
Merged

✨ D3B-674 add new CAVATICA gf fields #697

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3 changes: 3 additions & 0 deletions kf_lib_data_ingest/common/concept_schema.py
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Original file line number Diff line number Diff line change
Expand Up @@ -211,8 +211,11 @@ class GENOMIC_FILE(PropertyMixin, FileMixin):
WORKFLOW_TOOL = None
WORKFLOW_TYPE = None
WORKFLOW_VERSION = None
WORKFLOW_ENDPOINT = None
FILE_VERSION_DESCRIPTOR = None
DATA_CATEGORY = None
CAVATICA_FILE_ID = None
CAVATICA_VOLUME = None

class READ_GROUP(PropertyMixin):
PAIRED_END = None
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7 changes: 7 additions & 0 deletions kf_lib_data_ingest/target_api_plugins/kids_first_dataservice.py
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Expand Up @@ -757,6 +757,13 @@ def hashes(record):
"reference_genome": record.get(
CONCEPT.GENOMIC_FILE.REFERENCE_GENOME
),
"cavatica_file_id": record.get(
CONCEPT.GENOMIC_FILE.CAVATICA_FILE_ID
),
"cavatica_volume": record.get(CONCEPT.GENOMIC_FILE.CAVATICA_VOLUME),
"workflow_endpoint": record.get(
CONCEPT.GENOMIC_FILE.WORKFLOW_ENDPOINT
),
"workflow_type": record.get(CONCEPT.GENOMIC_FILE.WORKFLOW_TYPE),
"workflow_tool": record.get(CONCEPT.GENOMIC_FILE.WORKFLOW_TOOL),
"workflow_version": record.get(
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