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Add dataloaders for variant-effect prediction #21

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Avsecz opened this issue Nov 23, 2018 · 0 comments
Open
1 task

Add dataloaders for variant-effect prediction #21

Avsecz opened this issue Nov 23, 2018 · 0 comments

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@Avsecz
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Avsecz commented Nov 23, 2018

Implement efficient dataloaders for each dataloaders performing in-silico mutagnesis.

Schema

{
  "inputs" {
       "ref": {},
       "alt": {},
  "metadata": {
     "variant": {}   # TODO - have a standard variant class
      "seq": {"ranges": kipoi.metadata.GenomicRanges   } 
}
}

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