onsuccess report

[gipert]

To be added. Pasting here old code

    from snakemake.report import auto_report
    rep_dir = f"{log_path(config)}/report-{datetime.strftime(datetime.utcnow(), '%Y%m%dT%H%M%SZ')}"
    Path(rep_dir).mkdir(parents=True, exist_ok=True)
    # auto_report(workflow.persistence.dag, f"{rep_dir}/report.html")
    auto_report(workflow.persistence.dag, report_plugin, report_settings)

    with open(os.path.join(rep_dir, "dag.txt"), "w") as f:
        f.writelines(str(workflow.persistence.dag))
        # shell(f"cat {rep_dir}/dag.txt | dot -Tpdf > {rep_dir}/dag.pdf")

    with open(f"{rep_dir}/rg.txt", "w") as f:
        f.writelines(str(workflow.persistence.dag.rule_dot()))
        # shell(f"cat {rep_dir}/rg.txt | dot -Tpdf > {rep_dir}/rg.pdf")

[ggmarshall]

This just outputs the full dag and rule graph in dot format, want to add a pdf generation with a summary this is generated by the --report option in snakemake, but it needs a file input and we also might want to add extras e.g. warnings/errors encountered in processing